当前解析结果
SmilChr08G002400| 统一新 Gene ID | SmilChr08G002400 |
|---|---|
| 名称 | SmilChr08G002400 |
| 描述 | protein PHOSPHATE STARVATION RESPONSE 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 22783831 - 22789958 / - |
| NCBI Gene ID | LOC131001919 |
|---|---|
| GeneID | 131001919 |
| locus_tag | - |
| NCBI Name | LOC131001919 |
| 原始查询 | LOC131001919 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein PHOSPHATE STARVATION RESPONSE 1-like |
| 产物 | protein PHOSPHATE STARVATION RESPONSE 1-like |
| Arabidopsis | AT3G04450 (AT3G04450)Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819601] identity=48.3; qcov=0.638; evalue=8.85e-80; confidence=high |
| Rice | Os03g0329900 (PHR1)- identity=46; qcov=0.67; evalue=1.5e-66; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF14379 (Myb_CC_LHEQLE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001919 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057784548.1 |
| 2 | Nucleoplasm | 核质 | 0.40000 | XP_057784548.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057784548.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057784548.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057784548.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:22784260 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,B44 |
Chr8:22784264 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr8:22784346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B15,B41,C15,C81 |
Chr8:22786463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,B8,C17 |
Chr8:22786492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:22787222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B108,B12,B46,C85 |
Chr8:22787472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:22787486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B108,B12,B46,C85 |
Chr8:22787608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr8:22787618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784548.1PF00249
Myb_DNA-binding 236-287 aa
PF14379
Myb_CC_LHEQLE 320-366 aa
XP_057784549.1PF00249
Myb_DNA-binding 236-287 aa
PF14379
Myb_CC_LHEQLE 320-366 aa
XP_057784550.1PF00249
Myb_DNA-binding 236-287 aa
PF14379
Myb_CC_LHEQLE 320-366 aa
XP_057784551.1PF00249
Myb_DNA-binding 236-287 aa
PF14379
Myb_CC_LHEQLE 320-366 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784548.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 236 | 287 | 3.4e-09 | 37.4 | Myb-like DNA-binding domain |
XP_057784548.1 |
Pfam | PF14379 |
Myb_CC_LHEQLE | Family | 320 | 366 | 4.8e-21 | 74.9 | MYB-CC type transfactor, LHEQLE motif |
XP_057784549.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 236 | 287 | 3.4e-09 | 37.4 | Myb-like DNA-binding domain |
XP_057784549.1 |
Pfam | PF14379 |
Myb_CC_LHEQLE | Family | 320 | 366 | 4.8e-21 | 74.9 | MYB-CC type transfactor, LHEQLE motif |
XP_057784550.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 236 | 287 | 3.4e-09 | 37.4 | Myb-like DNA-binding domain |
XP_057784550.1 |
Pfam | PF14379 |
Myb_CC_LHEQLE | Family | 320 | 366 | 4.8e-21 | 74.9 | MYB-CC type transfactor, LHEQLE motif |
XP_057784551.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 236 | 287 | 3.4e-09 | 37.4 | Myb-like DNA-binding domain |
XP_057784551.1 |
Pfam | PF14379 |
Myb_CC_LHEQLE | Family | 320 | 366 | 4.8e-21 | 74.9 | MYB-CC type transfactor, LHEQLE motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。