Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002403`

染色体: Chr08 坐标: 22819350-22827427 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002403`
名称	SmilChr08G002403
描述	protein CHROMATIN REMODELING 20-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	22819350 - 22827427 / `-`

ID 对照

NCBI Gene ID	`LOC131001922`
GeneID	`131001922`
locus_tag	`-`
NCBI Name	`LOC131001922`
原始查询	`LOC131001922`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein CHROMATIN REMODELING 20-like
产物	protein CHROMATIN REMODELING 20-like
Arabidopsis	`AT1G08600` (ATRX) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837382] identity=62.6; qcov=0.67; evalue=0; confidence=high
Rice	`Os10g0457700` - identity=65.8; qcov=0.545; evalue=0; confidence=medium
GO	GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0016887 (ATP hydrolysis activity); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	-
Pfam	PF00176 (SNF2-rel_dom); PF00271 (Helicase_C)
InterPro	-
eggNOG	-
NR	GeneID:131001922

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784554.1`
2	Chromosome	染色体	0.00000	`XP_057784554.1`
3	Centromere	着丝粒	0.00000	`XP_057784554.1`
4	Chromatin	染色质	0.00000	`XP_057784554.1`
5	Telomere	端粒	0.00000	`XP_057784554.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:22819534`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr8:22819653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B103,B135,B35,C61,C62
`Chr8:22819661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,C82
`Chr8:22820002`	`TG`	`T`	1bp_deletion	frameshift_variant	6	A20,A25,B136,B37,C31,C70
`Chr8:22820097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B72,C26
`Chr8:22820124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,B104
`Chr8:22820137`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:22820382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr8:22820592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,B8
`Chr8:22820682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B22,C59,D2
`Chr8:22821084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr8:22821249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784554.1

1256 aa

628

1256

SNF2-rel_dom

Helicase_C

PF00176 SNF2-rel_dom 507-824 aa PF00271 Helicase_C 899-1025 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784554.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	507	824	2.3e-49	168.8	SNF2-related domain
`XP_057784554.1`	Pfam	`PF00271`	Helicase_C	Domain	899	1025	1.2e-20	74.4	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928571.1
TCCGCTACAGTGATGACCACTACTTTGCCCGCCACGCAAGAAAATTCGAATGACCAGACATCGTTTCGCCTCCCATTAATCTTCCATCTCTCCCATTTATTTATACTACGTGAAGATTTTGAATAAACACTAAAACTTCTGCAGAAAAACCAGTAAGAAATGGAGAATGGTAATTCCGACGATGATTATCTGGAAAATGAAAGTATTGCTCAATATTACGAAGATGAGGAGGAATCATTTTCCCAGGAACCTTTGTCTGA...

CDS

1 records

下载 CDS FASTA

LOC131001922
ATGGAGAATGGTAATTCCGACGATGATTATCTGGAAAATGAAAGTATTGCTCAATATTACGAAGATGAGGAGGAATCATTTTCCCAGGAACCTTTGTCTGAAGAGGAGTTGGAAAATCTCGTAGCCGAGCTTGTAGAAATTGAGAGAAAATCCGCCGAAGCGCAAGAGGCTTTGGAAGAGGAACCTCTGATGGAAGTAGAAGCCGATGCTAGGGAAGAATTAGCTCAGTCTCTCTCGGGTGATGAATTGGAGAAGGCTGT...

Protein

1 records

下载 Protein FASTA

XP_057784554.1
MENGNSDDDYLENESIAQYYEDEEESFSQEPLSEEELENLVAELVEIERKSAEAQEALEEEPLMEVEADAREELAQSLSGDELEKAVLEEMSIYKEEWELMLDELEKESAYLLEQLDGSGIDLSSLYKWIEKQVPNICHTEAWKGRTHWVGTQISDEATKSVLQAEEYLKIHRPVRRWHGASGFLGKKIAKCDKSVAVDKSMDKDWEAFGKLCSETASNKDNEPGATHWASVYLASTPLQAAALGLKSAGVDEVEEIDDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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