当前解析结果
SmilChr08G002416| 统一新 Gene ID | SmilChr08G002416 |
|---|---|
| 名称 | SmilChr08G002416 |
| 描述 | F-box/kelch-repeat protein At1g23390-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 22966997 - 22968523 / - |
| NCBI Gene ID | LOC131001937 |
|---|---|
| GeneID | 131001937 |
| locus_tag | - |
| NCBI Name | LOC131001937 |
| 原始查询 | LOC131001937 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At1g23390-like |
| 产物 | F-box/kelch-repeat protein At1g23390-like |
| Arabidopsis | AT1G23390 (AT1G23390)Kelch repeat-containing F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:838947] identity=41.4; qcov=1; evalue=1.26e-78; confidence=medium |
| Rice | Os09g0292900 (IBF1)- identity=31.3; qcov=0.763; evalue=5.35e-25; confidence=low |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001937 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057784566.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057784566.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057784566.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784566.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784566.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:22967166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:22967269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:22967603 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C30,C36,C42,C52 |
Chr8:22967736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B46,C85 |
Chr8:22967808 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:22967905 |
CA |
C |
1bp_deletion | frameshift_variant | 6 | B27,B3,B69,C78,D1,D5 |
Chr8:22968276 |
C |
CAT |
2bp_insertion | frameshift_variant | 1 | B62 |
Chr8:22968276 |
C |
CAT |
2bp_insertion | CDS_variant | 1 | B62 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。