当前解析结果
SmilChr08G002423| 统一新 Gene ID | SmilChr08G002423 |
|---|---|
| 名称 | SmilChr08G002423 |
| 描述 | U-box domain-containing protein 51-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 23016378 - 23019934 / - |
| NCBI Gene ID | LOC131001942 |
|---|---|
| GeneID | 131001942 |
| locus_tag | - |
| NCBI Name | LOC131001942 |
| 原始查询 | LOC131001942 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 51-like |
| 产物 | U-box domain-containing protein 51-like |
| Arabidopsis | AT2G24370 (AT2G24370)kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816973] identity=56; qcov=1.09; evalue=0; confidence=high |
| Rice | Os02g0787200 (OsRLCK87)- identity=54.3; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00582 (Usp); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001942 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057784575.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057784575.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057784575.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057784575.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057784575.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:23017219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr8:23017355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr8:23017430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:23017819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr8:23017909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C16,C43,D3 |
Chr8:23017910 |
GC |
G |
1bp_deletion | frameshift_variant | 59 | A19,A23,A4,B101,B106,B108,B11,B114,B115,B117,B124,B127,B131,B140,B17,B22,B24,B26,B29,B4,B42,B43,B54,B61,B66,B77,B78,B8,B93,B95,B98,C1,C10,C19,C24,C26,C3,C36,C37,C38,C39,C4,C45,C46,C49,C50,C52,C59,C7,C71,C73,C77,C8,C80,C81,D2,D4,D6,D9 |
Chr8:23017919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C16,C43,D3 |
Chr8:23018143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,C41,C87 |
Chr8:23018410 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,D10 |
Chr8:23018416 |
T |
TG |
1bp_insertion | frameshift_variant | 7 | A13,A19,B106,B120,B14,B99,D7 |
Chr8:23018471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C16,C43 |
Chr8:23019147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784575.1PF00582
Usp 22-158 aa
PF00069
Pkinase 433-688 aa
PF07714
PK_Tyr_Ser-Thr 436-690 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784575.1 |
Pfam | PF00582 |
Usp | Domain | 22 | 158 | 2.1e-10 | 42.0 | Universal stress protein family |
XP_057784575.1 |
Pfam | PF00069 |
Pkinase | Domain | 433 | 688 | 5.3e-40 | 138.2 | Protein kinase domain |
XP_057784575.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 436 | 690 | 8.3e-42 | 144.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。