当前解析结果
SmilChr08G002438| 统一新 Gene ID | SmilChr08G002438 |
|---|---|
| 名称 | SmilChr08G002438 |
| 描述 | RNA pseudouridine synthase 5 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 23210624 - 23215877 / - |
| NCBI Gene ID | LOC131001957 |
|---|---|
| GeneID | 131001957 |
| locus_tag | - |
| NCBI Name | LOC131001957 |
| 原始查询 | LOC131001957 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA pseudouridine synthase 5 |
| 产物 | RNA pseudouridine synthase 5 |
| Arabidopsis | AT3G52260 (AT3G52260)Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824391] identity=65.2; qcov=0.98; evalue=4.11e-131; confidence=high |
| Rice | Os03g0288500- identity=66.7; qcov=0.311; evalue=1.23e-37; confidence=low |
| GO | GO:0001522 (pseudouridine synthesis); GO:0003723 (RNA binding); GO:0009982 (pseudouridine synthase activity) |
| KEGG | - |
| Pfam | PF00849 (PseudoU_synth_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001957 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057784593.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057784587.1 |
| 3 | Mitochondrion | 线粒体 | 0.40000 | XP_057784589.1 |
| 4 | Nucleus | 细胞核 | 0.20000 | XP_057784587.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784587.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:23211784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B105,B139,B28,D4 |
Chr8:23212786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B118,B44,B60 |
Chr8:23212796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,C87 |
Chr8:23213460 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:23215640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A8,B84 |
Chr8:23215686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784587.1PF00849
PseudoU_synth_2 100-277 aa
XP_057784588.1PF00849
PseudoU_synth_2 100-277 aa
XP_057784589.1PF00849
PseudoU_synth_2 100-277 aa
XP_057784590.1PF00849
PseudoU_synth_2 100-277 aa
XP_057784591.1PF00849
PseudoU_synth_2 100-277 aa
XP_057784592.1PF00849
PseudoU_synth_2 100-277 aa
XP_057784593.1PF00849
PseudoU_synth_2 32-209 aa
XP_057784594.1PF00849
PseudoU_synth_2 32-209 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784587.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 100 | 277 | 2.8e-21 | 77.0 | RNA pseudouridylate synthase |
XP_057784588.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 100 | 277 | 2.4e-21 | 77.2 | RNA pseudouridylate synthase |
XP_057784589.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 100 | 277 | 2.1e-21 | 77.4 | RNA pseudouridylate synthase |
XP_057784590.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 100 | 277 | 2.1e-21 | 77.4 | RNA pseudouridylate synthase |
XP_057784591.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 100 | 277 | 1.7e-21 | 77.8 | RNA pseudouridylate synthase |
XP_057784592.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 100 | 277 | 1.7e-21 | 77.8 | RNA pseudouridylate synthase |
XP_057784593.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 32 | 209 | 1.6e-21 | 77.8 | RNA pseudouridylate synthase |
XP_057784594.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 32 | 209 | 1.6e-21 | 77.8 | RNA pseudouridylate synthase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
8 records
下载 cDNA FASTA8 records
下载 CDS FASTA8 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。