当前解析结果
SmilChr08G002449| 统一新 Gene ID | SmilChr08G002449 |
|---|---|
| 名称 | SmilChr08G002449 |
| 描述 | cell division control protein 48 homolog C-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 23302920 - 23311712 / - |
| NCBI Gene ID | LOC131001968 |
|---|---|
| GeneID | 131001968 |
| locus_tag | - |
| NCBI Name | LOC131001968 |
| 原始查询 | LOC131001968 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cell division control protein 48 homolog C-like |
| 产物 | cell division control protein 48 homolog C-like |
| Arabidopsis | AT3G01610 (CDC48C)cell division cycle 48C [Source:NCBI gene (formerly Entrezgene);Acc:821105] identity=42.5; qcov=0.825; evalue=3.99e-130; confidence=medium |
| Rice | Os06g0109400- identity=46.5; qcov=0.789; evalue=1.19e-155; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0016887 (ATP hydrolysis activity); GO:0042254 (ribosome biogenesis); GO:0051973 (GO:0051973); GO:1990275 (preribosome binding) |
| KEGG | smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00004 (AAA); PF01443 (Viral_helicase1); PF05496 (RuvB_N); PF07728 (AAA_5); PF17862 (AAA_lid_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001968 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057784613.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057784613.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057784612.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784612.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784612.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:23304215 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr8:23304561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:23305495 |
AT |
A |
1bp_deletion | frameshift_variant | 65 | A14,A18,A5,A7,A8,B101,B104,B109,B114,B115,B119,B122,B140,B24,B27,B29,B3,B37,B43,B48,B51,B56,B64,B67,B70,B72,B75,B78,B83,B86,B87,B95,B98,C12,C13,C16,C17,C23,C27,C28,C31,C32,C33,C37,C38,C40,C46,C48,C5,C50,C53,C57,C64,C67,C68,C72,C74,C77,C8,C82,C83,C9,D6,D8,D9 |
Chr8:23305498 |
T |
TA |
1bp_insertion | frameshift_variant | 64 | A14,A18,A5,A7,A8,B101,B104,B109,B115,B119,B122,B140,B24,B26,B27,B29,B3,B37,B43,B48,B51,B56,B64,B67,B70,B72,B75,B78,B83,B86,B87,B95,B98,C12,C13,C16,C17,C23,C27,C28,C31,C32,C33,C38,C40,C46,C48,C5,C50,C53,C57,C64,C67,C68,C72,C74,C77,C8,C82,C83,C9,D6,D8,D9 |
Chr8:23305513 |
CCG |
C |
2bp_deletion | frameshift_variant | 67 | A14,A18,A5,A7,A8,B101,B104,B109,B114,B115,B119,B122,B132,B140,B17,B24,B27,B29,B3,B37,B43,B48,B51,B56,B64,B67,B70,B72,B75,B78,B83,B86,B87,B95,B98,C12,C13,C16,C17,C23,C27,C28,C31,C32,C33,C37,C38,C40,C46,C48,C5,C50,C53,C57,C64,C67,C68,C72,C74,C77,C8,C82,C83,C9,D6,D8,D9 |
Chr8:23305717 |
AT |
A |
1bp_deletion | frameshift_variant | 68 | A10,A11,A19,A3,A5,B103,B104,B11,B110,B115,B124,B129,B14,B140,B17,B19,B23,B24,B26,B34,B37,B44,B45,B50,B52,B53,B54,B55,B66,B73,B76,B77,B79,B80,B82,B93,B94,B98,C11,C13,C17,C2,C20,C26,C29,C3,C32,C33,C36,C38,C41,C42,C43,C45,C50,C53,C56,C58,C63,C68,C69,C70,C74,C78,C82,D10,D2,D4 |
Chr8:23307132 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,C4,C54 |
Chr8:23307142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:23307204 |
AAG |
A |
2bp_deletion | frameshift_variant | 6 | A8,B101,B11,B41,B44,C61 |
Chr8:23307207 |
C |
CAT |
2bp_insertion | frameshift_variant | 6 | A8,B101,B11,B41,B44,C61 |
Chr8:23307234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B101,B11,B44,C61 |
Chr8:23307238 |
A |
ACC |
2bp_insertion | frameshift_variant | 2 | B101,B11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784612.1PF05496
RuvB_N 216-292 aa
PF01443
Viral_helicase1 218-284 aa
PF07728
AAA_5 218-355 aa
PF00004
AAA 218-362 aa
PF17862
AAA_lid_3 384-423 aa
PF00004
AAA 521-632 aa
XP_057784613.1PF05496
RuvB_N 216-292 aa
PF01443
Viral_helicase1 218-284 aa
PF07728
AAA_5 218-355 aa
PF00004
AAA 218-362 aa
PF17862
AAA_lid_3 384-423 aa
PF00004
AAA 509-612 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784612.1 |
Pfam | PF05496 |
RuvB_N | Domain | 216 | 292 | 6.1e-15 | 56.0 | Holliday junction DNA helicase RuvB P-loop domain |
XP_057784612.1 |
Pfam | PF01443 |
Viral_helicase1 | Domain | 218 | 284 | 9.5e-07 | 29.6 | Viral superfamily 1 RNA helicase core domain |
XP_057784612.1 |
Pfam | PF07728 |
AAA_5 | Domain | 218 | 355 | 2.4e-11 | 44.5 | AAA domain (dynein-related subfamily) |
XP_057784612.1 |
Pfam | PF00004 |
AAA | Domain | 218 | 362 | 1.5e-59 | 200.9 | ATPase family associated with various cellular activities (AAA) |
XP_057784612.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 384 | 423 | 2e-18 | 66.3 | AAA+ lid domain |
XP_057784612.1 |
Pfam | PF00004 |
AAA | Domain | 521 | 632 | 1.5e-59 | 200.9 | ATPase family associated with various cellular activities (AAA) |
XP_057784613.1 |
Pfam | PF05496 |
RuvB_N | Domain | 216 | 292 | 4.8e-11 | 43.4 | Holliday junction DNA helicase RuvB P-loop domain |
XP_057784613.1 |
Pfam | PF01443 |
Viral_helicase1 | Domain | 218 | 284 | 0.00014 | 22.5 | Viral superfamily 1 RNA helicase core domain |
XP_057784613.1 |
Pfam | PF07728 |
AAA_5 | Domain | 218 | 355 | 9.3e-07 | 29.6 | AAA domain (dynein-related subfamily) |
XP_057784613.1 |
Pfam | PF00004 |
AAA | Domain | 218 | 362 | 2.2e-53 | 180.9 | ATPase family associated with various cellular activities (AAA) |
XP_057784613.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 384 | 423 | 1.8e-18 | 66.4 | AAA+ lid domain |
XP_057784613.1 |
Pfam | PF00004 |
AAA | Domain | 509 | 612 | 2.2e-53 | 180.9 | ATPase family associated with various cellular activities (AAA) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。