当前解析结果
SmilChr08G002453| 统一新 Gene ID | SmilChr08G002453 |
|---|---|
| 名称 | SmilChr08G002453 |
| 描述 | uncharacterized SmilChr08G002453 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 23343007 - 23345210 / - |
| NCBI Gene ID | LOC131001972 |
|---|---|
| GeneID | 131001972 |
| locus_tag | - |
| NCBI Name | LOC131001972 |
| 原始查询 | LOC131001972 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838631]; symbol=AT1G20430; hit=AT1G20430; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838631]; symbol=AT1G20430; hit=AT1G20430; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G20430 (AT1G20430)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838631] identity=47.1; qcov=0.713; evalue=1.76e-25; confidence=medium |
| Rice | Os06g0213900- identity=45.7; qcov=0.664; evalue=4.01e-19; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001972 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057784616.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057784617.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.80000 | XP_057784617.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057784616.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784616.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:23343228 |
AT |
A |
1bp_deletion | frameshift_variant | 63 | A1,A11,A14,A21,A8,B100,B102,B11,B112,B117,B124,B125,B127,B129,B131,B136,B14,B17,B2,B20,B21,B28,B30,B32,B35,B38,B39,B53,B61,B62,B65,B66,B67,B69,B7,B71,B72,B77,B79,B82,B9,B90,B92,B93,C1,C13,C14,C24,C25,C3,C31,C37,C42,C5,C51,C54,C55,C60,C74,C83,C9,D5,D6 |
Chr8:23343251 |
A |
AG |
1bp_insertion | frameshift_variant | 67 | A10,A19,A21,A22,A24,A4,B100,B102,B11,B112,B113,B122,B123,B131,B133,B136,B137,B138,B14,B2,B20,B25,B28,B30,B32,B35,B38,B60,B62,B66,B71,B72,B73,B77,B79,B85,B86,B88,B9,B90,B93,B94,C1,C13,C18,C21,C23,C24,C26,C29,C3,C30,C37,C41,C43,C45,C48,C51,C52,C54,C58,C64,C69,C74,C75,C8,C87 |
Chr8:23343306 |
G |
A |
EMS_canonical_SNV | stop_gained | 128 | A1,A10,A11,A14,A18,A19,A21,A22,A24,A25,A4,A6,A8,A9,B100,B101,B102,B103,B11,B110,B112,B113,B114,B117,B121,B122,B124,B127,B128,B129,B13,B131,B133,B135,B136,B137,B138,B139,B14,B16,B17,B2,B20,B21,B28,B29,B30,B31,B32,B35,B38,B39,B51,B53,B55,B57,B60,B61,B62,B63,B65,B66,B67,B69,B7,B71,B72,B73,B75,B77,B79,B81,B82,B84,B85,B86,B88,B9,B90,B91,B92,B93,B94,B99,C1,C13,C14,C18,C21,C23,C24,C25,C26,C29,C3,C30,C31,C33,C36,C37,C41,C42,C43,C45,C48,C5,C51,C52,C54,C55,C56,C57,C58,C60,C64,C65,C69,C74,C75,C79,C8,C80,C83,C87,C9,D10,D5,D6 |
Chr8:23343386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C14 |
Chr8:23343533 |
G |
GC |
1bp_insertion | frameshift_variant | 31 | A6,B1,B10,B104,B105,B109,B118,B119,B12,B120,B127,B140,B23,B28,B38,B39,B4,B44,B54,B59,B60,B72,C26,C32,C36,C38,C68,C71,C82,D11,D4 |
Chr8:23343538 |
G |
GT |
1bp_insertion | frameshift_variant | 8 | B117,B53,B63,B71,B79,C18,C29,C58 |
Chr8:23344473 |
GC |
G |
1bp_deletion | frameshift_variant | 3 | B67,B7,C33 |
Chr8:23344473 |
GC |
G |
1bp_deletion | CDS_variant | 3 | B67,B7,C33 |
Chr8:23344932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:23344975 |
AC |
A |
1bp_deletion | frameshift_variant | 35 | A6,B1,B10,B104,B105,B109,B118,B119,B12,B120,B127,B140,B23,B28,B38,B39,B4,B44,B54,B59,B60,B62,B72,B82,C10,C26,C32,C36,C38,C41,C68,C71,C82,D11,D4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。