Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002455`

染色体: Chr08 坐标: 23361233-23375662 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002455`
名称	SmilChr08G002455
描述	homeobox-leucine zipper protein REVOLUTA-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	23361233 - 23375662 / `+`

ID 对照

NCBI Gene ID	`LOC131001974`
GeneID	`131001974`
locus_tag	`-`
NCBI Name	`LOC131001974`
原始查询	`LOC131001974`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-leucine zipper protein REVOLUTA-like
产物	homeobox-leucine zipper protein REVOLUTA-like
Arabidopsis	`AT5G60690` (REV) Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836190] identity=43.8; qcov=1; evalue=0; confidence=medium
Rice	`Os10g0480200` (Oshox9) - identity=42.7; qcov=1.01; evalue=0; confidence=medium
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00046 (Homeodomain); PF01852 (START); PF08670 (MEKHLA)
InterPro	-
eggNOG	-
NR	GeneID:131001974

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784619.1`
2	Cytoplasm	细胞质	0.40000	`XP_057784619.1`
3	Cytosol	细胞质基质	0.20000	`XP_057784619.1`
4	Chromosome	染色体	0.00000	`XP_057784619.1`
5	Centromere	着丝粒	0.00000	`XP_057784619.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:23362762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,C41
`Chr8:23363637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,B125,B18
`Chr8:23365599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B15,B27,B41,C15
`Chr8:23365743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr8:23366323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,B41,C15
`Chr8:23372407`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr8:23373794`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,C15
`Chr8:23373951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr8:23375510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784619.1

830 aa

415

830

Homeodomain

START

MEKHLA

PF00046 Homeodomain 28-85 aa PF01852 START 166-370 aa PF08670 MEKHLA 683-825 aa

XP_057784620.1

829 aa

414

829

Homeodomain

START

MEKHLA

PF00046 Homeodomain 28-85 aa PF01852 START 166-370 aa PF08670 MEKHLA 683-824 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784619.1`	Pfam	`PF00046`	Homeodomain	Domain	28	85	2.4e-12	47.2	Homeodomain
`XP_057784619.1`	Pfam	`PF01852`	START	Domain	166	370	3.8e-34	118.6	START domain
`XP_057784619.1`	Pfam	`PF08670`	MEKHLA	Domain	683	825	1.2e-22	81.1	MEKHLA domain
`XP_057784620.1`	Pfam	`PF00046`	Homeodomain	Domain	28	85	2.4e-12	47.2	Homeodomain
`XP_057784620.1`	Pfam	`PF01852`	START	Domain	166	370	3.8e-34	118.6	START domain
`XP_057784620.1`	Pfam	`PF08670`	MEKHLA	Domain	683	824	1.5e-23	84.0	MEKHLA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928636.1
GGAAATTTGGATAACCCTCATTTCCCATTCCCGCCCCCTCCCTCCAATAAAAGGGGGCCAAATTGAAATTTTGGCCAATGATTTCATTTCATTTCACGATATTCAGAATATTTTTTAAGGAAATTAGGGTTTTGTTTTGTTTTCTGGAGCATAATTCTCCAATGGCGGTAAATCGAATAACCGTCTCCAGCTGTGAACTCATTTGTGTGGGCGAAGTATTTGTAGTTTTGTGTGAATATTTTCGAACAGAGATGTATAGA...

XM_057928637.1
CCCATTCCCGCCCCCTCCCTCCAATAAAAGGGGGCCAAATTGAAATTTTGGCCAATGATTTCATTTCATTTCACGATATTCAGAATATTTTTTAAGGAAATTAGGGTTTTGTTTTGTTTTCTGGAGCATAATTCTCCAATGGCGGTAAATCGAATAACCGTCTCCAGCTGTGAACTCATTTGTGTGGGCGAAGTATTTGTAGTTTTGTGTGAATATTTTCGAACAGAGATGTATAGATTGAATTTGATTAAGCATCTTAT...

CDS

2 records

下载 CDS FASTA

LOC131001974
ATGGCTAGAACAGAAGTAATGGTTGGTGAGAGTATCCAAAAAGGCAAGGGCGTGAGGAAAAGGCGTCAAGAGGGAGGAAAGTATGCTCGATACTCAGAAGATCAGATTGAGGTTCTTGAGAAAGCTTATGCTGTGTGCTCAAATCCAACCCATTTCCAGCGGCAACAGATTATGCGTGACCAACCTGCTCTGAGGGGCATTGACCACAAACAACTTAAAGTCTGGTTCCAAAACCGCAGATGTCGCGAAAAGCAGAAGAA...

Protein

2 records

下载 Protein FASTA

XP_057784619.1
MARTEVMVGESIQKGKGVRKRRQEGGKYARYSEDQIEVLEKAYAVCSNPTHFQRQQIMRDQPALRGIDHKQLKVWFQNRRCREKQKKESGDVASENRRLNEANKMLKEENDGLQKKLTQLISENGQLRNQVLGLTSTISTYQLGHQPEASNPQLPVIVADKGLVSLAEETRKEFLSKAIGTAINWVPVPWPKLQSPVSAGIIYTSSSCIGVAARAYVTVPLEPFKIIEIFKDRASWSRHCRNMDVIARFPANNGGTIELI...

XP_057784620.1
MARTEVMVGESIQKGKGVRKRRQEGGKYARYSEDQIEVLEKAYAVCSNPTHFQRQQIMRDQPALRGIDHKQLKVWFQNRRCREKQKKESGDVASENRRLNEANKMLKEENDGLQKKLTQLISENGQLRNQVLGLTSTISTYQLGHQPEASNPQLPVIVADKGLVSLAEETRKEFLSKAIGTAINWVPVPWPKLQSPVSAGIIYTSSSCIGVAARAYVTVPLEPFKIIEIFKDRASWSRHCRNMDVIARFPANNGGTIELI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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