当前解析结果
SmilChr08G002458| 统一新 Gene ID | SmilChr08G002458 |
|---|---|
| 名称 | SmilChr08G002458 |
| 描述 | GCN5-related N-acetyltransferase 4, chloroplastic-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 23401613 - 23404622 / + |
| NCBI Gene ID | LOC131001977 |
|---|---|
| GeneID | 131001977 |
| locus_tag | - |
| NCBI Name | LOC131001977 |
| 原始查询 | LOC131001977 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GCN5-related N-acetyltransferase 4, chloroplastic-like |
| 产物 | GCN5-related N-acetyltransferase 4%2C chloroplastic-like |
| Arabidopsis | AT2G39000 (AT2G39000)Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818486] identity=72.5; qcov=0.818; evalue=3.82e-126; confidence=high |
| Rice | Os02g0806000 (OJ1548_F12.27-1)- identity=58.3; qcov=0.782; evalue=5.04e-98; confidence=high |
| GO | GO:0006474 (N-terminal protein amino acid acetylation); GO:0008080 (N-acetyltransferase activity); GO:0009507 (chloroplast) |
| KEGG | - |
| Pfam | PF00583 (Acetyltransf_1); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001977 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057784624.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057784624.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057784624.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784624.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784624.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:23401906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B15,B27,B41,C15 |
Chr8:23402861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,B132,C65 |
Chr8:23403005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr8:23403027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr8:23403074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B118,B140,B44,B60,C82 |
Chr8:23404234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B136 |
Chr8:23404268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B118,B140,B44,B60,C82 |
Chr8:23404353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C21,C36 |
Chr8:23404387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784624.1PF00583
Acetyltransf_1 174-246 aa
PF13673
Acetyltransf_10 184-249 aa
PF13508
Acetyltransf_7 186-247 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784624.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 174 | 246 | 4.8e-17 | 63.0 | Acetyltransferase (GNAT) family |
XP_057784624.1 |
Pfam | PF13673 |
Acetyltransf_10 | Domain | 184 | 249 | 5.5e-08 | 33.6 | Acetyltransferase (GNAT) domain |
XP_057784624.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 186 | 247 | 2.3e-10 | 41.4 | Acetyltransferase (GNAT) domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。