Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002458

染色体: Chr08 坐标: 23401613-23404622 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002458
名称SmilChr08G002458
描述GCN5-related N-acetyltransferase 4, chloroplastic-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向23401613 - 23404622 / +

ID 对照

NCBI Gene IDLOC131001977
GeneID131001977
locus_tag-
NCBI NameLOC131001977
原始查询LOC131001977

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述GCN5-related N-acetyltransferase 4, chloroplastic-like
产物GCN5-related N-acetyltransferase 4%2C chloroplastic-like
ArabidopsisAT2G39000 (AT2G39000)
Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818486]
identity=72.5; qcov=0.818; evalue=3.82e-126; confidence=high
RiceOs02g0806000 (OJ1548_F12.27-1)
-
identity=58.3; qcov=0.782; evalue=5.04e-98; confidence=high
GOGO:0006474 (N-terminal protein amino acid acetylation); GO:0008080 (N-acetyltransferase activity); GO:0009507 (chloroplast)
KEGG-
PfamPF00583 (Acetyltransf_1); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10)
InterPro-
eggNOG-
NRGeneID:131001977

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057784624.1
2 Chloroplast stroma 叶绿体基质 0.80000 XP_057784624.1
3 Nucleus 细胞核 0.00000 XP_057784624.1
4 Chromosome 染色体 0.00000 XP_057784624.1
5 Centromere 着丝粒 0.00000 XP_057784624.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:23401906 G A EMS_canonical_SNV CDS_variant 4 B15,B27,B41,C15
Chr8:23402861 G A EMS_canonical_SNV CDS_variant 3 B130,B132,C65
Chr8:23403005 G A EMS_canonical_SNV CDS_variant 1 C4
Chr8:23403027 G A EMS_canonical_SNV CDS_variant 1 B130
Chr8:23403074 G A EMS_canonical_SNV CDS_variant 5 B118,B140,B44,B60,C82
Chr8:23404234 C T EMS_canonical_SNV CDS_variant 2 B1,B136
Chr8:23404268 C T EMS_canonical_SNV CDS_variant 5 B118,B140,B44,B60,C82
Chr8:23404353 C T EMS_canonical_SNV CDS_variant 3 B125,C21,C36
Chr8:23404387 C T EMS_canonical_SNV CDS_variant 1 D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057784624.1
285 aa
N
1
142
285
Acetyltransf_1
Acetyltransf_10
Acetyltransf_7
C
PF00583 Acetyltransf_1 174-246 aa PF13673 Acetyltransf_10 184-249 aa PF13508 Acetyltransf_7 186-247 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784624.1 Pfam PF00583 Acetyltransf_1 Family 174 246 4.8e-17 63.0 Acetyltransferase (GNAT) family
XP_057784624.1 Pfam PF13673 Acetyltransf_10 Domain 184 249 5.5e-08 33.6 Acetyltransferase (GNAT) domain
XP_057784624.1 Pfam PF13508 Acetyltransf_7 Domain 186 247 2.3e-10 41.4 Acetyltransferase (GNAT) domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057928641.1
TAGAATTGTGTCAGTTAGCTAACTATGCTTTGTCTGTTTGTGCTTCTTGCTCTTTGTCTTTTAGATTAGCTTAAACAAAACCAACCGCTTCAGCCAAGACTATTCAGTATTCACAATCTCTCTCTCTCTCTTCAATTATTTAATGAAGAAGCCCTCCTGACACCAAAATAGTGAAGAGGAGGAATCCCAAAATCTGGGATTTTCAGAGAATCTAGGACAGATTGCTTCTGTGTGTTTTCTCTTTCCACCAGGGGAGAGAG...

CDS

1 records

下载 CDS FASTA
LOC131001977
ATGCAGACCGTTCCTTCTATAACAAGAGTAGTGAATGGCAGCAGCTTCAGTCTCAATATCTCTCTCAAAATCAAGAATCTCAAGCCCCACTCCTTTTCCACTCCTTCCAAGATTTTGAATTGTGAAATTCCTAACTCTCCTTCACCCCCACATGTGTCGGGGCTTTGCAGGGCAAGTCAAGTGGCTGAGCTATTCCCGACAACGTCTCCTGAGATTGTTGTTCGGGAGGCTAGGATAGAGGACTGTTGGGAAGTGGCTGA...

Protein

1 records

下载 Protein FASTA
XP_057784624.1
MQTVPSITRVVNGSSFSLNISLKIKNLKPHSFSTPSKILNCEIPNSPSPPHVSGLCRASQVAELFPTTSPEIVVREARIEDCWEVAETHCSCFFPEYSFPLDFVLRFDRLVGMLFGFSIPKGCERTCLVAVIGRSGEDSFFIGSDEFKIGGLEGKISLNKGYVAGILTVDTVADFLPRKGPLRQRRRGVAYISNVAVRENFRRKGIAKQLIAKAEAKAKAWGCRAIALHCDLSNPGATKLYTSQGFKIIKIPEGANWPHP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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