Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002513`

染色体: Chr08 坐标: 24283383-24287177 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002513`
名称	SmilChr08G002513
描述	uncharacterized SmilChr08G002513
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	24283383 - 24287177 / `+`

ID 对照

NCBI Gene ID	`LOC131002029`
GeneID	`131002029`
locus_tag	`-`
NCBI Name	`LOC131002029`
原始查询	`LOC131002029`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DCD (Development and Cell Death) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:820271]; symbol=AT3G11000; hit=AT3G11000; species=arabidopsis; confidence=medium
产物	DCD (Development and Cell Death) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:820271]; symbol=AT3G11000; hit=AT3G11000; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G11000` (AT3G11000) DCD (Development and Cell Death) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:820271] identity=42.2; qcov=0.566; evalue=6.72e-53; confidence=medium
Rice	`Os05g0164900` - identity=49; qcov=0.425; evalue=1.33e-51; confidence=low
GO	GO:0034976 (response to endoplasmic reticulum stress)
KEGG	-
Pfam	PF10539 (Dev_Cell_Death)
InterPro	-
eggNOG	-
NR	GeneID:131002029

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057784686.1`
2	Nucleus	细胞核	0.80000	`XP_057784687.1`
3	Cytosol	细胞质基质	0.40000	`XP_057784686.1`
4	P-body	P-body	0.20000	`XP_057784686.1`
5	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057784687.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:24283840`	`GTC`	`G`	2bp_deletion	frameshift_variant	36	A15,A20,A25,A4,A8,A9,B1,B106,B109,B113,B114,B119,B13,B134,B22,B37,B47,B56,B59,B6,B72,B75,B96,C16,C25,C26,C34,C37,C42,C46,C56,C70,C71,C72,C79,D7
`Chr8:24283846`	`C`	`CGG`	2bp_insertion	frameshift_variant	18	A15,A20,A25,A9,B134,B22,B37,B47,B56,B59,B96,C16,C42,C56,C70,C71,C79,D7
`Chr8:24284000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,B49,B98,C32,C68
`Chr8:24284777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr8:24285480`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,C77
`Chr8:24286920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784686.1

564 aa

282

564

Dev_Cell_Death

PF10539 Dev_Cell_Death 150-279 aa

XP_057784687.1

452 aa

226

452

Dev_Cell_Death

PF10539 Dev_Cell_Death 38-167 aa

XP_057784688.1

452 aa

226

452

Dev_Cell_Death

PF10539 Dev_Cell_Death 38-167 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784686.1`	Pfam	`PF10539`	Dev_Cell_Death	Domain	150	279	9.9e-47	158.6	Development and cell death domain
`XP_057784687.1`	Pfam	`PF10539`	Dev_Cell_Death	Domain	38	167	6.5e-47	159.2	Development and cell death domain
`XP_057784688.1`	Pfam	`PF10539`	Dev_Cell_Death	Domain	38	167	6.5e-47	159.2	Development and cell death domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057928703.1
TCGCCTCAATCCTCATCATCTGCAATAGTGAATCAAAGCAGAGCCGGCAGCGCTCATCAATCCTGCTGATCATCGGCGACGGCAGCTTCGGGCTGGTGTACAAGGCCCAGCTGAACTCCGGCGCGTGGTGGCCGTGAAGAAGCTCTCCCCGGACGCCTTCAGGGGAGGAGGGAGAGAGAGAGCTAAGAAAAGAGAGAAAGGGGTGGGGAAAGGGTGAAGAACCAAGGAAATGGGAGGAGGACCGAGGATTTCAACGATTT...

XM_057928704.1
TCGCCTCAATCCTCATCATCTGCAATAGTGAATCAAAGCAGAGCCGGCAGCGCTCATCAATCCTGCTGATCATCGGCGACGGCAGCTTCGGGCTGGTGTACAAGGCCCAGCTGAACTCCGGCGCGTGGTGGCCGTGAAGAAGCTCTCCCCGGACGCCTTCAGGGGAGGAGGGAGAGAGAGAGCTAAGAAAAGAGAGAAAGGGGTGGGGAAAGGGTGAAGAACCAAGGAAATGGGAGGAGGACCGAGGATTTCAACGATTT...

CDS

3 records

下载 CDS FASTA

LOC131002029
ATGACACCAATTCCTCCAATCAAACTCTTTTTACCCTTTGTTATTACAAGGGTAATATCGACATTTCATCCACAACTACCACCTTTCTGGCATGTTGTCACACAGCTTCTGCAACATTTTTTTTCTTCTTTTGATGGAAAACTTCTGCAACATTTAACAGAAAAGTACAAGTATTTTGCGTTCCTTCCCACTATAGTCTGTTCTACGTTGATCTCCATTTCTTTCAGAAAAATCTGCAACGTCCAATCTCAGTTGTGTGC...

LOC131002029
ATGGGGGCGGGCAGAAAAACTACAACAATTACACTGGAGGAGAAATATGAAACTTCCTGGAAAGCTAACGCTGGTGCACCTGCTAGAAATTTGACAAAAGTTGAACTCGGAGCCATTATATTTGGATGCAAGCATAGCACTATCAAGGAATGCTTGGAAAATGAGCTTTTTGGATTGCCAGCTGGGCATTATTCATATGTGAAGAAAGCAACCCCTGGCCTTCCACTTTTTCTGTTCAACTATAGTGACCGGAAGCTTCA...

Protein

3 records

下载 Protein FASTA

XP_057784686.1
MTPIPPIKLFLPFVITRVISTFHPQLPPFWHVVTQLLQHFFSSFDGKLLQHLTEKYKYFAFLPTIVCSTLISISFRKICNVQSQLCAAILSFLSHTFINAKLFSVFACLKSEMGAGRKTTTITLEEKYETSWKANAGAPARNLTKVELGAIIFGCKHSTIKECLENELFGLPAGHYSYVKKATPGLPLFLFNYSDRKLHGVFEAVSCGQMNIDLNAWITTSEGAATTPYPAQVRIRATCRCRPLLEEEMRPIIANNYYTE...

XP_057784687.1
MGAGRKTTTITLEEKYETSWKANAGAPARNLTKVELGAIIFGCKHSTIKECLENELFGLPAGHYSYVKKATPGLPLFLFNYSDRKLHGVFEAVSCGQMNIDLNAWITTSEGAATTPYPAQVRIRATCRCRPLLEEEMRPIIANNYYTEKFFWFELDKEQTKRLMTLFKSSPCPENILRPSNADWKKNIFNAPLRSSVVNLEARYGMAEARLKENKQSNVSVCNSNRDAFSPEKKWSELFKPSSSSSAVNHAEVSTPQKVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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