当前解析结果
SmilChr01G004365| 统一新 Gene ID | SmilChr01G004365 |
|---|---|
| 名称 | SmilChr01G004365 |
| 描述 | transcription initiation factor IIB-2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61839478 - 61842573 / + |
| NCBI Gene ID | LOC131002033 |
|---|---|
| GeneID | 131002033 |
| locus_tag | - |
| NCBI Name | LOC131002033 |
| 原始查询 | LOC131002033 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription initiation factor IIB-2-like |
| 产物 | transcription initiation factor IIB-2-like |
| Arabidopsis | AT3G10330 (AT3G10330)Cyclin-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:820195] identity=74.1; qcov=1; evalue=5.45e-179; confidence=high |
| Rice | Os09g0534800 (OsTFIIB)- identity=71.2; qcov=0.997; evalue=8.54e-173; confidence=high |
| GO | GO:0005634 (nucleus); GO:0006352 (DNA-templated transcription initiation); GO:0017025 (TBP-class protein binding); GO:0070897 (transcription preinitiation complex assembly); GO:0097550 (transcription preinitiation complex) |
| KEGG | smil03022 (Basal transcription factors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00134 (Cyclin_N); PF00382 (TFIIB); PF08271 (Zn_Ribbon_TF) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002033 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057784692.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057784692.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057784692.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057784692.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057784692.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61839798 |
TG |
T |
1bp_deletion | frameshift_variant | 16 | A15,A2,B100,B15,B49,B67,B79,B91,B97,C10,C11,C18,C56,C76,C82,D7 |
Chr1:61839823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr1:61839980 |
CG |
C |
1bp_deletion | frameshift_variant | 51 | A1,A15,A2,A23,A25,A6,B101,B106,B120,B123,B128,B129,B15,B25,B34,B35,B36,B37,B41,B43,B47,B49,B5,B6,B67,B75,B87,B90,B91,B92,B96,B97,C10,C12,C31,C33,C40,C54,C56,C57,C61,C62,C67,C69,C74,C76,C77,C81,C82,C85,D11 |
Chr1:61840041 |
GC |
G |
1bp_deletion | frameshift_variant | 52 | A1,A13,A23,A25,B100,B114,B120,B123,B128,B129,B132,B139,B25,B26,B29,B35,B36,B37,B43,B47,B5,B50,B55,B57,B58,B87,B90,B92,B95,C12,C23,C25,C31,C33,C4,C45,C48,C49,C54,C56,C57,C61,C62,C65,C74,C80,C81,C83,C85,D11,D5,D6 |
Chr1:61840046 |
C |
CTA |
2bp_insertion | frameshift_variant | 61 | A1,A13,A15,A18,A2,A23,A25,A6,B100,B101,B118,B12,B120,B123,B129,B133,B15,B25,B26,B37,B43,B49,B5,B65,B67,B80,B91,B92,B96,B97,C10,C12,C20,C21,C23,C27,C29,C31,C33,C37,C40,C45,C48,C49,C54,C56,C57,C61,C62,C65,C67,C69,C74,C76,C81,C82,C83,C85,C87,D11,D4 |
Chr1:61840049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:61842363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784692.1PF08271
Zn_Ribbon_TF 7-48 aa
PF00134
Cyclin_N 102-197 aa
PF00382
TFIIB 104-184 aa
PF00382
TFIIB 204-289 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784692.1 |
Pfam | PF08271 |
Zn_Ribbon_TF | Domain | 7 | 48 | 3.1e-15 | 56.1 | TFIIB zinc-binding |
XP_057784692.1 |
Pfam | PF00134 |
Cyclin_N | Domain | 102 | 197 | 4.1e-06 | 27.2 | Cyclin, N-terminal domain |
XP_057784692.1 |
Pfam | PF00382 |
TFIIB | Domain | 104 | 184 | 7.4e-33 | 113.2 | Transcription factor TFIIB repeat |
XP_057784692.1 |
Pfam | PF00382 |
TFIIB | Domain | 204 | 289 | 7.4e-33 | 113.2 | Transcription factor TFIIB repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。