Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004361`

染色体: Chr01 坐标: 61797285-61801848 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004361`
名称	SmilChr01G004361
描述	MADS-box transcription factor 23-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61797285 - 61801848 / `-`

ID 对照

NCBI Gene ID	`LOC131002100`
GeneID	`131002100`
locus_tag	`-`
NCBI Name	`LOC131002100`
原始查询	`LOC131002100`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MADS-box transcription factor 23-like
产物	MADS-box transcription factor 23-like
Arabidopsis	`AT5G13790` (AGL15) AGAMOUS-like 15 [Source:NCBI gene (formerly Entrezgene);Acc:831224] identity=42.8; qcov=0.915; evalue=2.6e-53; confidence=medium
Rice	`Os02g0170300` (MADS29) - identity=39.1; qcov=0.903; evalue=1.15e-41; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:131002100

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784706.1`
2	Chromosome	染色体	0.00000	`XP_057784706.1`
3	Centromere	着丝粒	0.00000	`XP_057784706.1`
4	Chromatin	染色质	0.00000	`XP_057784706.1`
5	Telomere	端粒	0.00000	`XP_057784706.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61797661`	`T`	`TA`	1bp_insertion	frameshift_variant	102	A10,A11,A13,A15,A20,A21,A24,A25,A3,A7,A9,B105,B107,B108,B109,B111,B112,B113,B118,B119,B125,B127,B130,B134,B136,B138,B15,B16,B22,B23,B28,B29,B3,B31,B33,B35,B37,B4,B42,B43,B47,B48,B49,B53,B55,B59,B6,B60,B61,B63,B65,B66,B67,B72,B78,B79,B8,B88,B89,B9,B90,B92,B93,B95,B97,B98,B99,C11,C15,C17,C18,C2,C22,C24,C27,C3,C32,C34,C37,C39,C42,C44,C5,C53,C54,C56,C57,C61,C63,C68,C69,C7,C71,C73,C77,C81,C83,C85,D1,D5,D8,D9
`Chr1:61797673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:61797710`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B126,B35,C19,C6,C78
`Chr1:61797821`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,C26,C80
`Chr1:61798805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784706.1

272 aa

136

272

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 95-183 aa

XP_057784707.1

258 aa

129

258

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 95-183 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784706.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.1e-25	89.5	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057784706.1`	Pfam	`PF01486`	K-box	Family	95	183	8.6e-17	61.8	K-box region
`XP_057784707.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1e-25	89.6	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057784707.1`	Pfam	`PF01486`	K-box	Family	95	183	7.9e-17	61.9	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928724.1
TATAAATATACATACATACATAATATATGAGTAGCAGAAGCAAATAGTAGTAGGATTCATCATATAGCGATAAAGAATGGGGAGGGGAAAAATAGAGATAAAAAAGATCGAAAACGTGAACAGCCGTCAAGTAACGTTCTCGAAACGGCGCGGCGGATTGCTAAAGAAGGCAAACGAGTTGGCCGTTTTGTGCGACGCTCAGGTTGCCGTCATCATCTTTTCTGGTACCGGAAAACTCTACGAGTTCGCCAGTTCATGCA...

XM_057928723.1
AAACACACGCACATAGACATATATATAAATATACATACATACATAATATATGAGTAGCAGAAGCAAATAGTAGTAGGATTCATCATATAGCGATAAAGAATGGGGAGGGGAAAAATAGAGATAAAAAAGATCGAAAACGTGAACAGCCGTCAAGTAACGTTCTCGAAACGGCGCGGCGGATTGCTAAAGAAGGCAAACGAGTTGGCCGTTTTGTGCGACGCTCAGGTTGCCGTCATCATCTTTTCTGGTACCGGAAAACT...

CDS

2 records

下载 CDS FASTA

LOC131002100
ATGGGGAGGGGAAAAATAGAGATAAAAAAGATCGAAAACGTGAACAGCCGTCAAGTAACGTTCTCGAAACGGCGCGGCGGATTGCTAAAGAAGGCAAACGAGTTGGCCGTTTTGTGCGACGCTCAGGTTGCCGTCATCATCTTTTCTGGTACCGGAAAACTCTACGAGTTCGCCAGTTCATGCATGGATCAAATTTTGGTGAGATATAATCAAAACCGTGGAAGCCCAAGCCTACAACTTGCACCTATTGATGCTTACGT...

Protein

2 records

下载 Protein FASTA

XP_057784706.1
MGRGKIEIKKIENVNSRQVTFSKRRGGLLKKANELAVLCDAQVAVIIFSGTGKLYEFASSCMDQILVRYNQNRGSPSLQLAPIDAYVDDEPDEPDNQPEEATVDTDSLKHEIEKLHLMHRRMMGKELDELTYNELHNLEQQLTEGILSVKERKEKLLLEQMEISKQQEKKIVQQNEVLLEKIEELRQHARLNSKENHVIVSKESCLSSSSMHECRSAKEGTSDTSLRLGYVNNYLLVPDYTFLKLHWLILFELKIELNQI...

XP_057784707.1
MGRGKIEIKKIENVNSRQVTFSKRRGGLLKKANELAVLCDAQVAVIIFSGTGKLYEFASSCMDQILVRYNQNRGSPSLQLAPIDAYVDDEPDEPDNQPEEATVDTDSLKHEIEKLHLMHRRMMGKELDELTYNELHNLEQQLTEGILSVKERKEKLLLEQMEISKQQEKKIVQQNEVLLEKIEELRQHARLNSKENHVIVSKESCLSSSSMHECRSAKEGTSDTSLRLGISPAAIVSEARKMPKLEKSNGSKGAMHVD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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