Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004354`

染色体: Chr01 坐标: 61727024-61727644 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004354`
名称	SmilChr01G004354
描述	pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61727024 - 61727644 / `-`

ID 对照

NCBI Gene ID	`LOC131002280`
GeneID	`131002280`
locus_tag	`-`
NCBI Name	`LOC131002280`
原始查询	`LOC131002280`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At1g77360%2C mitochondrial-like
Arabidopsis	`AT1G77360` (APPR6) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844072] identity=70.3; qcov=0.932; evalue=4.24e-100; confidence=high
Rice	`Os03g0761300` - identity=59.9; qcov=0.981; evalue=2.9e-78; confidence=high
GO	GO:0005515 (protein binding); GO:0008380 (RNA splicing)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long)
InterPro	-
eggNOG	-
NR	GeneID:131002280

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057784752.1`
2	Nucleus	细胞核	0.00000	`XP_057784752.1`
3	Chromosome	染色体	0.00000	`XP_057784752.1`
4	Centromere	着丝粒	0.00000	`XP_057784752.1`
5	Chromatin	染色质	0.00000	`XP_057784752.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61727064`	`C`	`CAG`	2bp_insertion	frameshift_variant	110	A15,A2,A25,A5,A6,A7,A9,B10,B100,B101,B103,B107,B108,B11,B110,B111,B114,B117,B118,B119,B120,B121,B124,B127,B13,B132,B135,B137,B140,B17,B18,B19,B2,B20,B22,B26,B33,B38,B39,B40,B43,B44,B45,B48,B49,B50,B51,B52,B53,B54,B56,B57,B60,B63,B64,B67,B70,B72,B80,B86,B87,B9,B91,B93,B94,B95,B96,B99,C10,C11,C15,C16,C17,C2,C24,C27,C28,C29,C31,C32,C33,C34,C35,C38,C4,C40,C41,C43,C44,C45,C46,C52,C53,C56,C58,C60,C62,C68,C69,C73,C74,C75,C79,C80,C81,C83,C84,C9,D2,D3
`Chr1:61727068`	`ATT`	`A`	2bp_deletion	frameshift_variant	110	A15,A2,A25,A5,A6,A7,A9,B10,B100,B101,B103,B107,B108,B11,B110,B111,B114,B117,B118,B119,B120,B121,B124,B127,B13,B132,B135,B137,B140,B17,B18,B19,B2,B20,B22,B26,B33,B38,B39,B40,B43,B44,B45,B48,B49,B50,B51,B52,B53,B54,B56,B57,B60,B63,B64,B67,B70,B72,B80,B86,B87,B9,B91,B93,B94,B95,B96,B99,C10,C11,C15,C16,C17,C2,C24,C27,C28,C29,C31,C32,C33,C34,C35,C38,C4,C40,C41,C43,C44,C45,C46,C52,C53,C56,C58,C60,C62,C68,C69,C73,C74,C75,C79,C80,C81,C83,C84,C9,D2,D3
`Chr1:61727131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,C59,C64
`Chr1:61727195`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr1:61727199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B21,C1,C51
`Chr1:61727208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B3,C49,C59,C64
`Chr1:61727224`	`G`	`A`	EMS_canonical_SNV	stop_gained	22	A14,B122,B130,B131,B2,B30,B34,B41,B53,B58,B74,B82,B83,B84,C10,C21,C28,C60,C70,C72,C80,D11
`Chr1:61727355`	`TG`	`T`	1bp_deletion	frameshift_variant	2	A3,C37
`Chr1:61727355`	`TG`	`T`	1bp_deletion	CDS_variant	2	A3,C37
`Chr1:61727438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,C5
`Chr1:61727504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,C62
`Chr1:61727520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B18,B7,C67,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784752.1

206 aa

103

206

PPR_long

PPR_3

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PF17177 PPR_long 112-204 aa PF13812 PPR_3 125-172 aa PF13041 PPR_2 126-174 aa PF01535 PPR 129-157 aa PF12854 PPR_1 157-189 aa PF13041 PPR_2 160-206 aa PF01535 PPR 164-191 aa PF13812 PPR_3 165-204 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784752.1`	Pfam	`PF17177`	PPR_long	Repeat	112	204	2e-07	31.4	Pentacotripeptide-repeat region of PRORP
`XP_057784752.1`	Pfam	`PF13812`	PPR_3	Repeat	125	172	6.1e-09	36.5	Pentatricopeptide repeat domain
`XP_057784752.1`	Pfam	`PF13041`	PPR_2	Repeat	126	174	1.1e-22	80.6	PPR repeat family
`XP_057784752.1`	Pfam	`PF01535`	PPR	Repeat	129	157	6.4e-10	39.3	PPR repeat
`XP_057784752.1`	Pfam	`PF12854`	PPR_1	Repeat	157	189	6.2e-12	45.8	PPR repeat
`XP_057784752.1`	Pfam	`PF13041`	PPR_2	Repeat	160	206	1.1e-22	80.6	PPR repeat family
`XP_057784752.1`	Pfam	`PF01535`	PPR	Repeat	164	191	6.4e-10	39.3	PPR repeat
`XP_057784752.1`	Pfam	`PF13812`	PPR_3	Repeat	165	204	6.1e-09	36.5	Pentatricopeptide repeat domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928769.1
ATGATCGTGAAAAATAGGCCATTTTTCAGGTTCGTGACGTTTGGCAGGCTGCATAGTGCCAGCGAGGCAGTGAAAGATTCATTCGATGTAACGAAAAGGGTCTGCAAGATCATGATGTCTTGCCCCAAACTAGGCCTCGACACGGTTCTTGATCAAAGCGGCATTCGTGTCTCCGAAGACGTGGCCGAGAAGGTCCTTGAGCGGTTCGAGAATGCTGGGATGCTAGCTCACCGGTTCTTCGAGTGGGCCGGGAAGCAGAG...

CDS

1 records

下载 CDS FASTA

LOC131002280
ATGATCGTGAAAAATAGGCCATTTTTCAGGTTCGTGACGTTTGGCAGGCTGCATAGTGCCAGCGAGGCAGTGAAAGATTCATTCGATGTAACGAAAAGGGTCTGCAAGATCATGATGTCTTGCCCCAAACTAGGCCTCGACACGGTTCTTGATCAAAGCGGCATTCGTGTCTCCGAAGACGTGGCCGAGAAGGTCCTTGAGCGGTTCGAGAATGCTGGGATGCTAGCTCACCGGTTCTTCGAGTGGGCCGGGAAGCAGAG...

Protein

1 records

下载 Protein FASTA

XP_057784752.1
MIVKNRPFFRFVTFGRLHSASEAVKDSFDVTKRVCKIMMSCPKLGLDTVLDQSGIRVSEDVAEKVLERFENAGMLAHRFFEWAGKQRHYEHSVRAYHIMIESMAKIRQYEIMWDLMNAMRGKEMLNIETFCIIMRKYARAQKVDEAVYTFNIMNKYNVPPNLAAFNGLLSALCKSKNVRKAQEIFDAMKNDQFCPDPKSYSILIEG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器