Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004326

染色体: Chr01 坐标: 61412236-61414958 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004326
名称SmilChr01G004326
描述zinc finger A20 and AN1 domain-containing stress-associated protein 8-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向61412236 - 61414958 / -

ID 对照

NCBI Gene IDLOC131002323
GeneID131002323
locus_tag-
NCBI NameLOC131002323
原始查询LOC131002323

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述zinc finger A20 and AN1 domain-containing stress-associated protein 8-like
产物zinc finger A20 and AN1 domain-containing stress-associated protein 8-like
ArabidopsisAT1G51200 (AT1G51200)
A20/AN1-like zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:841543]
identity=54.5; qcov=1.07; evalue=1.68e-46; confidence=medium
RiceOs06g0612800 (Osi-SAP8)
-
identity=63.5; qcov=1.03; evalue=4.92e-76; confidence=high
GOGO:0003677 (DNA binding); GO:0008270 (zinc ion binding)
KEGG-
PfamPF01428 (zf-AN1); PF01754 (zf-A20)
InterPro-
eggNOG-
NRGeneID:131002323

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057784800.1
2 Cytoplasm 细胞质 0.60000 XP_057784800.1
3 Nucleoplasm 核质 0.20000 XP_057784800.1
4 Chromosome 染色体 0.00000 XP_057784800.1
5 Centromere 着丝粒 0.00000 XP_057784800.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:61412639 G A EMS_canonical_SNV CDS_variant 3 B125,B90,B92

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057784800.1
165 aa
N
1
82
165
zf-A20
zf-AN1
C
PF01754 zf-A20 16-41 aa PF01428 zf-AN1 106-143 aa
XP_057784807.1
165 aa
N
1
82
165
zf-A20
zf-AN1
C
PF01754 zf-A20 16-41 aa PF01428 zf-AN1 106-143 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784800.1 Pfam PF01754 zf-A20 Domain 16 41 8.5e-14 51.6 A20-like zinc finger
XP_057784800.1 Pfam PF01428 zf-AN1 Domain 106 143 5e-08 33.6 AN1-like Zinc finger
XP_057784807.1 Pfam PF01754 zf-A20 Domain 16 41 8.5e-14 51.6 A20-like zinc finger
XP_057784807.1 Pfam PF01428 zf-AN1 Domain 106 143 5e-08 33.6 AN1-like Zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057928817.1
CTGATATTCCTCGCCGTCGTTTTCTGGAACCATACGAGAAATACACCGAAACCTCTCTCTCTCCCCCAATTTGAATATATAAATCAAGTCATATAAGAGCCCAATCTAATCTATCCGACCCTTATTCCGGATTTTTGTTGCAGATTGAGATTGTTCAGGCTCCAAGAGTTCACAGCTCCAAAGCTAGAGTACAAAGAAGGGCATAATATCGTCTGATCAAAAATCAAACCCGAGTCTCTATCTCCTCTTTTTCGCCCCTA...
XM_057928824.1
ATCCGACCCTTATTCCGGATTTTTGTTGCAGATTGAGATTGTTCAGGCTCCAAGAGTTCACAGCTCCAAAGCTAGAGTGATTTTCTCTTTCTTGGTCTCTTTCAATTCTTTATTAATTTTATTTTTACCATTTTTTAAATAAATTAACTTCTTTAAATACCGAAAGGTACAAAGAAGGGCATAATATCGTCTGATCAAAAATCAAACCCGAGTCTCTATCTCCTCTTTTTCGCCCCTACGCCTCTTGAATCTTGCTCATA...

CDS

2 records

下载 CDS FASTA
LOC131002323
ATGGAATCCACCAAAGAGACTGGTTGCCAAGCTGCAGAAGGTCCCATTTTATGCATAAACAACTGTGGCTTCTTCGGGAGTGCTACGACGATGAATATGTGCTCCAAGTGTCACAAGGACATGATACTGAAACAACAACACGCCAAGCTTGCAGCATCATCCATTGAGAATATTGTAAATGGTGGATCAAGTAGCAACGAGAAAGTACTTGATTTTGCTGATGCAGCCAGTGTTGAAGCAGGATCAGTCGAGTTGAAGGC...
LOC131002323
ATGGAATCCACCAAAGAGACTGGTTGCCAAGCTGCAGAAGGTCCCATTTTATGCATAAACAACTGTGGCTTCTTCGGGAGTGCTACGACGATGAATATGTGCTCCAAGTGTCACAAGGACATGATACTGAAACAACAACACGCCAAGCTTGCAGCATCATCCATTGAGAATATTGTAAATGGTGGATCAAGTAGCAACGAGAAAGTACTTGATTTTGCTGATGCAGCCAGTGTTGAAGCAGGATCAGTCGAGTTGAAGGC...

Protein

2 records

下载 Protein FASTA
XP_057784800.1
MESTKETGCQAAEGPILCINNCGFFGSATTMNMCSKCHKDMILKQQHAKLAASSIENIVNGGSSSNEKVLDFADAASVEAGSVELKAAPEQSSNAEPKAKQGPNRCTICCKRVGLTPFKCKCGDLFCSIHRYADKHACPFDYQAAARDAIAKANPIVKAEKVDKI
XP_057784807.1
MESTKETGCQAAEGPILCINNCGFFGSATTMNMCSKCHKDMILKQQHAKLAASSIENIVNGGSSSNEKVLDFADAASVEAGSVELKAAPEQSSNAEPKAKQGPNRCTICCKRVGLTPFKCKCGDLFCSIHRYADKHACPFDYQAAARDAIAKANPIVKAEKVDKI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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