Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004440`

染色体: Chr01 坐标: 62479382-62481765 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004440`
名称	SmilChr01G004440
描述	uncharacterized SmilChr01G004440
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62479382 - 62481765 / `-`

ID 对照

NCBI Gene ID	`LOC131002699`
GeneID	`131002699`
locus_tag	`-`
NCBI Name	`LOC131002699`
原始查询	`LOC131002699`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ribosomal protein S21 family protein [Source:NCBI gene (formerly Entrezgene);Acc:822240]; symbol=AT3G26360; hit=AT3G26360; species=arabidopsis; confidence=medium
产物	Ribosomal protein S21 family protein [Source:NCBI gene (formerly Entrezgene);Acc:822240]; symbol=AT3G26360; hit=AT3G26360; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G26360` (AT3G26360) Ribosomal protein S21 family protein [Source:NCBI gene (formerly Entrezgene);Acc:822240] identity=62.8; qcov=0.869; evalue=1.16e-34; confidence=medium
Rice	`Os03g0694700` - identity=56.1; qcov=0.828; evalue=1.1e-22; confidence=medium
GO	GO:0003735 (structural constituent of ribosome); GO:0005840 (ribosome); GO:0006412 (translation)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01165 (Ribosomal_S21)
InterPro	-
eggNOG	-
NR	GeneID:131002699

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057785157.1`
2	Mitochondrion matrix	线粒体基质	0.80000	`XP_057785157.1`
3	Nucleus	细胞核	0.00000	`XP_057785157.1`
4	Chromosome	染色体	0.00000	`XP_057785157.1`
5	Centromere	着丝粒	0.00000	`XP_057785157.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62480058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B10,C59
`Chr1:62480067`	`G`	`GA`	1bp_insertion	frameshift_variant	5	A19,A8,B1,B63,B7
`Chr1:62480067`	`G`	`GA`	1bp_insertion	CDS_variant	5	A19,A8,B1,B63,B7
`Chr1:62480083`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:62480084`	`G`	`A`	EMS_canonical_SNV	stop_gained	10	A10,A4,B110,B134,B135,B63,B73,B88,B98,C84
`Chr1:62480087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,B44,D5
`Chr1:62481119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:62481122`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B110,B124,B16,C67
`Chr1:62481165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B140,B25,B61
`Chr1:62481179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A3,B81,C27,C44,C64
`Chr1:62481188`	`G`	`A`	EMS_canonical_SNV	stop_gained	134	A13,A16,A18,A2,A20,A23,A3,B1,B10,B100,B101,B106,B107,B108,B109,B11,B110,B113,B115,B120,B122,B123,B124,B127,B128,B13,B130,B131,B132,B133,B136,B138,B14,B140,B15,B16,B22,B24,B25,B26,B27,B28,B29,B30,B33,B34,B36,B41,B42,B43,B45,B46,B47,B49,B52,B55,B6,B61,B62,B64,B7,B72,B73,B74,B78,B8,B80,B81,B82,B83,B84,B85,B86,B88,B90,B92,B95,B97,C1,C10,C12,C14,C16,C17,C2,C20,C22,C23,C27,C28,C31,C33,C37,C38,C4,C41,C43,C44,C45,C46,C47,C49,C5,C50,C52,C53,C56,C57,C58,C61,C62,C63,C64,C65,C66,C67,C68,C70,C71,C72,C75,C76,C80,C81,C86,C87,C9,D1,D10,D11,D2,D4,D7,D9
`Chr1:62481194`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B110,B88

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057785157.1

110 aa

110

Ribosomal_S21

PF01165 Ribosomal_S21 27-80 aa

XP_057785163.1

99 aa

Ribosomal_S21

PF01165 Ribosomal_S21 27-80 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057785157.1`	Pfam	`PF01165`	Ribosomal_S21	Family	27	80	5.6e-10	39.5	Ribosomal protein S21
`XP_057785163.1`	Pfam	`PF01165`	Ribosomal_S21	Family	27	80	1e-09	38.6	Ribosomal protein S21

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057929180.1
ATATATTTTGAATTTTTTCTTTAGCCTTTTAGAGTTCAACTAGGGTCTCTAGGGGTTCTGCATACAGACGTTTATTCAGCATACACTGCATCAGTTACCAAACAAATCAAATATGTGTAAAATGTGCGAAATTGGAATCCTTAATTAATTTCTAGTTTTTCTTATTACAGCATAATTAATCTTATTTTTTAGCAATATTTTACTATTATATGAAAAGAAGAATTATGAATAAAACACTACCAGAACCAATATTGGTGTTT...

XM_057929174.1
AACCAATATTGGTGTTTAACGTAAACTAAAAATTCGACCACAATGTTCTTACTCATTTTCTATACAAGAGGCCCACCCAAACCCTGCAGCCCAGTTTCATATTTATCCCAATCCCACATCCCCAAACAACCCTCAAATCAAATCCCAAATTCCAACCGATACAATGATTCAGGCGGCGGCGATGCGGCGGACCTCCTACTTTTCCATGAGTTCTCACCTGCAACAGTGCAGGGGCATCCGAGTCAAGGTTTACAACAGCA...

CDS

2 records

下载 CDS FASTA

LOC131002699
ATGATTCAGGCGGCGGCGATGCGGCGGACCTCCTACTTTTCCATGAGTTCTCACCTGCAACAGTGCAGGGGCATCCGAGTCAAGGTTTACAACAGCAATTTAGATCAGGCTTTGACCTTAATGCAGCGGAAGATGCAGTCCAGCGGCATCGAGCGAATGATAAAGCAGGAACAGCTTGCCCACGTCAAAAATTCCGAGAAGCGCGTTTTGGCCAAAAAGAATTTGGAGCGCAGGCTTCGCGCGCAGGATCTTGCCCGCAA...

Protein

2 records

下载 Protein FASTA

XP_057785157.1
MIQAAAMRRTSYFSMSSHLQQCRGIRVKVYNSNLDQALTLMQRKMQSSGIERMIKQEQLAHVKNSEKRVLAKKNLERRLRAQDLARKLKMILVQKVRVGVRRLRLFKCYF

XP_057785163.1
MIQAAAMRRTSYFSMSSHLQQCRGIRVKVYNSNLDQALTLMQRKMQSSGIERMIKQEQLAHVKNSEKRVLAKKNLERRLRAQDLARKLKMILVQKVRGI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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