Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004513`

染色体: Chr01 坐标: 63258257-63262797 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004513`
名称	SmilChr01G004513
描述	uncharacterized SmilChr01G004513
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63258257 - 63262797 / `+`

ID 对照

NCBI Gene ID	`LOC131003130`
GeneID	`131003130`
locus_tag	`-`
NCBI Name	`LOC131003130`
原始查询	`LOC131003130`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	splicing factor [Source:NCBI gene (formerly Entrezgene);Acc:836548]; symbol=AT5G64270; hit=AT5G64270; species=arabidopsis; confidence=high
产物	splicing factor [Source:NCBI gene (formerly Entrezgene);Acc:836548]; symbol=AT5G64270; hit=AT5G64270; species=arabidopsis; confidence=high
Arabidopsis	`AT5G64270` (AT5G64270) splicing factor [Source:NCBI gene (formerly Entrezgene);Acc:836548] identity=84.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0146400` - identity=85; qcov=1.02; evalue=0; confidence=high
GO	GO:0000245 (spliceosomal complex assembly); GO:0003729 (mRNA binding); GO:0005686 (U2 snRNP); GO:0005689 (U12-type spliceosomal complex); GO:0071004 (U2-type prespliceosome); GO:0071013 (catalytic step 2 spliceosome)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF08920 (SF3b1); PF22646 (PPP2R1A-like_HEAT)
InterPro	-
eggNOG	-
NR	GeneID:131003130

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057785591.1`
2	Nucleoplasm	核质	1.00000	`XP_057785591.1`
3	Cytoplasm	细胞质	0.80000	`XP_057785591.1`
4	Cytosol	细胞质基质	0.60000	`XP_057785591.1`
5	Chromatin	染色质	0.20000	`XP_057785591.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63259644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B25,B26,C40,C61,D7
`Chr1:63259698`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:63260164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B7,B97,C83
`Chr1:63260184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr1:63260227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr1:63260277`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,D7
`Chr1:63260322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:63260559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,D7
`Chr1:63260785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:63261591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr1:63262104`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,D7
`Chr1:63262125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057785591.1

1243 aa

622

1243

SF3b1

PPP2R1A-like_HEAT

PF08920 SF3b1 276-403 aa PF22646 PPP2R1A-like_HEAT 1040-1112 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057785591.1`	Pfam	`PF08920`	SF3b1	Domain	276	403	9e-52	175.7	Splicing factor 3B subunit 1
`XP_057785591.1`	Pfam	`PF22646`	PPP2R1A-like_HEAT	Repeat	1040	1112	1.5e-22	80.5	PPP2R1A-like HEAT repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057929608.1
TTAGACATTCGGGTATGTATAAAACAAAGCAGACACTACGCCCTTGCTAATTCGCATCGCGCTTCGAGCTCGACACTTCAGTGGAAAAAGAAAAGAGAAAAAATCCCAAAATCAGGATTCCAAATTTAGGGTTTTATATTTTCAGCTTTGGGGGAGTTCGAGGATCAGAAAGATGGATGCCGATTCAGAGATTCAAAAGTTGAAAGAAGAGAGGCAAAAAATGGAGAAGGACCTTGCTGCACTCACTTCTCTAACCTTTG...

CDS

1 records

下载 CDS FASTA

LOC131003130
ATGGATGCCGATTCAGAGATTCAAAAGTTGAAAGAAGAGAGGCAAAAAATGGAGAAGGACCTTGCTGCACTCACTTCTCTAACCTTTGACACTGATCTCTATAGTTCGAACAAGTTTGAAGGCTATGAACAATCTATAGCTGTGAATGAGGATGAGGATAATGCGGATCCGACTGAGAATGAGATTGCTCGAAAGATGGCATCATTTACTGCTCCAAAGCAATATTTTAAGGAGCCTCTGAGATCTGGGGAAGAGGATGA...

Protein

1 records

下载 Protein FASTA

XP_057785591.1
MDADSEIQKLKEERQKMEKDLAALTSLTFDTDLYSSNKFEGYEQSIAVNEDEDNADPTENEIARKMASFTAPKQYFKEPLRSGEEDEMSGFKQPGKIIDREDDYRRRRLNRIISPERNDPFLDKTPGPEVRTYADVMREEALKRKEEEVKREISKRKKEEEENKEKEKDVEKPKKRNRWDMSQDENAGGTKKSKAASDWDMPDSTPGIGRWDATPTPGRIGDATPSVSRKNRWDETPTPGRLNDSESTPAGGVTPGATPA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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