Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004484`

染色体: Chr01 坐标: 62965547-62971988 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004484`
名称	SmilChr01G004484
描述	calmodulin-interacting protein 111
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62965547 - 62971988 / `+`

ID 对照

NCBI Gene ID	`LOC131003151`
GeneID	`131003151`
locus_tag	`-`
NCBI Name	`LOC131003151`
原始查询	`LOC131003151`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calmodulin-interacting protein 111
产物	calmodulin-interacting protein 111
Arabidopsis	`AT3G56690` (CIP111) Cam interacting protein 111 [Source:NCBI gene (formerly Entrezgene);Acc:824836] identity=54.5; qcov=0.976; evalue=0; confidence=high
Rice	`Os03g0151800` (OsCDC48) - identity=39.6; qcov=0.665; evalue=3.4e-141; confidence=medium
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0009507 (chloroplast); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF05496 (RuvB_N); PF07728 (AAA_5); PF17862 (AAA_lid_3); PF26429 (DPBB_CI111)
InterPro	-
eggNOG	-
NR	GeneID:131003151

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057785621.1`
2	Peroxisome	过氧化物酶体	0.80000	`XP_057785632.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057785621.1`
4	Cytosol	细胞质基质	0.20000	`XP_057785625.1`
5	Mitochondrion	线粒体	0.20000	`XP_057785625.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62966223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,D2
`Chr1:62966291`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B46
`Chr1:62966291`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr1:62967147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,A24,B103,C15
`Chr1:62967242`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,B103,C15
`Chr1:62967261`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B13,B90,B92,C85
`Chr1:62967545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr1:62967585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr1:62967707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,A24,B103,C15
`Chr1:62967839`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,A24,B103,C15
`Chr1:62969822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:62970156`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057785621.1

1061 aa

530

1061

DPBB_CI111

RuvB_N

AAA_5

AAA

AAA_lid_3

AAA

AAA_lid_3

PF26429 DPBB_CI111 48-183 aa PF05496 RuvB_N 438-524 aa PF07728 AAA_5 454-572 aa PF00004 AAA 455-584 aa PF17862 AAA_lid_3 609-644 aa PF00004 AAA 793-924 aa PF17862 AAA_lid_3 947-992 aa

XP_057785625.1

951 aa

476

951

DPBB_CI111

RuvB_N

AAA_5

AAA

AAA_lid_3

AAA

AAA_lid_3

PF26429 DPBB_CI111 2-73 aa PF05496 RuvB_N 328-414 aa PF07728 AAA_5 344-462 aa PF00004 AAA 345-474 aa PF17862 AAA_lid_3 499-534 aa PF00004 AAA 683-814 aa PF17862 AAA_lid_3 837-882 aa

XP_057785632.1

939 aa

470

939

DPBB_CI111

RuvB_N

AAA_5

AAA

AAA_lid_3

AAA

AAA_lid_3

PF26429 DPBB_CI111 29-61 aa PF05496 RuvB_N 316-402 aa PF07728 AAA_5 332-450 aa PF00004 AAA 333-462 aa PF17862 AAA_lid_3 487-522 aa PF00004 AAA 671-802 aa PF17862 AAA_lid_3 825-870 aa

XP_057785637.1

939 aa

470

939

DPBB_CI111

RuvB_N

AAA_5

AAA

AAA_lid_3

AAA

AAA_lid_3

PF26429 DPBB_CI111 29-61 aa PF05496 RuvB_N 316-402 aa PF07728 AAA_5 332-450 aa PF00004 AAA 333-462 aa PF17862 AAA_lid_3 487-522 aa PF00004 AAA 671-802 aa PF17862 AAA_lid_3 825-870 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057785621.1`	Pfam	`PF26429`	DPBB_CI111	Domain	48	183	5.1e-57	192.3	CI111 double-psi beta barrel domain
`XP_057785621.1`	Pfam	`PF05496`	RuvB_N	Domain	438	524	7e-15	55.8	Holliday junction DNA helicase RuvB P-loop domain
`XP_057785621.1`	Pfam	`PF07728`	AAA_5	Domain	454	572	5.1e-11	43.5	AAA domain (dynein-related subfamily)
`XP_057785621.1`	Pfam	`PF00004`	AAA	Domain	455	584	2.8e-88	293.8	ATPase family associated with various cellular activities (AAA)
`XP_057785621.1`	Pfam	`PF17862`	AAA_lid_3	Domain	609	644	1.1e-26	92.7	AAA+ lid domain
`XP_057785621.1`	Pfam	`PF00004`	AAA	Domain	793	924	2.8e-88	293.8	ATPase family associated with various cellular activities (AAA)
`XP_057785621.1`	Pfam	`PF17862`	AAA_lid_3	Domain	947	992	1.1e-26	92.7	AAA+ lid domain
`XP_057785625.1`	Pfam	`PF26429`	DPBB_CI111	Domain	2	73	5.7e-30	104.6	CI111 double-psi beta barrel domain
`XP_057785625.1`	Pfam	`PF05496`	RuvB_N	Domain	328	414	5.1e-15	56.3	Holliday junction DNA helicase RuvB P-loop domain
`XP_057785625.1`	Pfam	`PF07728`	AAA_5	Domain	344	462	3.2e-11	44.1	AAA domain (dynein-related subfamily)
`XP_057785625.1`	Pfam	`PF00004`	AAA	Domain	345	474	2e-88	294.2	ATPase family associated with various cellular activities (AAA)
`XP_057785625.1`	Pfam	`PF17862`	AAA_lid_3	Domain	499	534	8.5e-27	93.0	AAA+ lid domain
`XP_057785625.1`	Pfam	`PF00004`	AAA	Domain	683	814	2e-88	294.2	ATPase family associated with various cellular activities (AAA)
`XP_057785625.1`	Pfam	`PF17862`	AAA_lid_3	Domain	837	882	8.5e-27	93.0	AAA+ lid domain
`XP_057785632.1`	Pfam	`PF26429`	DPBB_CI111	Domain	29	61	6e-10	39.7	CI111 double-psi beta barrel domain
`XP_057785632.1`	Pfam	`PF05496`	RuvB_N	Domain	316	402	4.8e-15	56.4	Holliday junction DNA helicase RuvB P-loop domain
`XP_057785632.1`	Pfam	`PF07728`	AAA_5	Domain	332	450	3e-11	44.2	AAA domain (dynein-related subfamily)
`XP_057785632.1`	Pfam	`PF00004`	AAA	Domain	333	462	1.9e-88	294.3	ATPase family associated with various cellular activities (AAA)
`XP_057785632.1`	Pfam	`PF17862`	AAA_lid_3	Domain	487	522	8.2e-27	93.1	AAA+ lid domain
`XP_057785632.1`	Pfam	`PF00004`	AAA	Domain	671	802	1.9e-88	294.3	ATPase family associated with various cellular activities (AAA)
`XP_057785632.1`	Pfam	`PF17862`	AAA_lid_3	Domain	825	870	8.2e-27	93.1	AAA+ lid domain
`XP_057785637.1`	Pfam	`PF26429`	DPBB_CI111	Domain	29	61	6e-10	39.7	CI111 double-psi beta barrel domain
`XP_057785637.1`	Pfam	`PF05496`	RuvB_N	Domain	316	402	4.8e-15	56.4	Holliday junction DNA helicase RuvB P-loop domain
`XP_057785637.1`	Pfam	`PF07728`	AAA_5	Domain	332	450	3e-11	44.2	AAA domain (dynein-related subfamily)
`XP_057785637.1`	Pfam	`PF00004`	AAA	Domain	333	462	1.9e-88	294.3	ATPase family associated with various cellular activities (AAA)
`XP_057785637.1`	Pfam	`PF17862`	AAA_lid_3	Domain	487	522	8.2e-27	93.1	AAA+ lid domain
`XP_057785637.1`	Pfam	`PF00004`	AAA	Domain	671	802	1.9e-88	294.3	ATPase family associated with various cellular activities (AAA)
`XP_057785637.1`	Pfam	`PF17862`	AAA_lid_3	Domain	825	870	8.2e-27	93.1	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057929638.1
CAAAATGATGTCTTAACAACAAAATAAATAAATAAGAAAAAGAGAGGGGAAAAAAGGGTCCTAAATAAACCTAAATTGACATTTTTCTTAAACCCAAATGTAGGGTTTTAAGCTTGATCGCAAATTCACTATCATTCTGACTCAACAACATGCCGACCAAGAAAAAGAACTCAAAAACACCTTCAAAACCCTCAAATTCCGACCAAAGCAGCCTTCTTTCGTCGCCTTCCGCTGCCTCTTCTTCTTCACTGTCGTCGCCG...

XM_057929642.1
TTCCCATCTCTCATCTCCGCAGCAGCTTTCGTCGGCACAGTCGTCGACGATGTCGTTTCCGACCCCAGAGGCTGCAAAATTTGGCTGTCTGAATCAGTCATGGTTTCTTCTTCAATTCCCCCAGGCTCCCTTGTCTCGGTATGAGCGGATTCCCTCTGTGTAAGCTACCAGATGAATGCGCTCAATGCTTTGGGTTTGACTTTACCAACAATTTGGCTGATGAACCTGGAACATATTTTGCTCTTGCGACCGTATTCCCA...

CDS

4 records

下载 CDS FASTA

LOC131003151
ATGCCGACCAAGAAAAAGAACTCAAAAACACCTTCAAAACCCTCAAATTCCGACCAAAGCAGCCTTCTTTCGTCGCCTTCCGCTGCCTCTTCTTCTTCACTGTCGTCGCCGTTCGATCCGACCCACGAACTGCTGCTGTACTCTCTCGATGAAGCTGCAGCTCAGTTCCCATCTCTCATCTCCGCAGCAGCTTTCGTCGGCACAGTCGTCGACGATGTCGTTTCCGACCCCAGAGGCTGCAAAATTTGGCTGTCTGAATC...

LOC131003151
ATGAGCGGATTCCCTCTGTGTAAGCTACCAGATGAATGCGCTCAATGCTTTGGGTTTGACTTTACCAACAATTTGGCTGATGAACCTGGAACATATTTTGCTCTTGCGACCGTATTCCCATCTAGTAAGGTTTCTAAAAATGGAGTGCGCTTGTCTTTGAACCTTTCACACACTCTGGGTTGTCCATGTTCAGGCAGGATGGTTTTTGTTTATCCTGTTAAGCGTCGCACCTTGACTGAGAATGGAAATGGGTCACGCTG...

Protein

4 records

下载 Protein FASTA

XP_057785621.1
MPTKKKNSKTPSKPSNSDQSSLLSSPSAASSSSLSSPFDPTHELLLYSLDEAAAQFPSLISAAAFVGTVVDDVVSDPRGCKIWLSESVMVSSSIPPGSLVSVSLSSLDKGMSGFPLCKLPDECAQCFGFDFTNNLADEPGTYFALATVFPSSKVSKNGVRLSLNLSHTLGCPCSGRMVFVYPVKRRTLTENGNGSRCGPAAGCISVDSLQEIYLSPVYLKGKDKTARSTSSHRDISKELAYGQAENSNISSPVTPSVSES...

XP_057785625.1
MSGFPLCKLPDECAQCFGFDFTNNLADEPGTYFALATVFPSSKVSKNGVRLSLNLSHTLGCPCSGRMVFVYPVKRRTLTENGNGSRCGPAAGCISVDSLQEIYLSPVYLKGKDKTARSTSSHRDISKELAYGQAENSNISSPVTPSVSESKISSPCSAQSRLLNYDQSASKRTYLSDAAFSILDMKGVLRDDSSRKLLEICTGSWLHSRSLLSGNFVAVPILSELCVFQVIGPKRLSSNSEVWNGNSDFPAQSLDEGKYA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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