Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004518`

染色体: Chr01 坐标: 63306648-63309440 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004518`
名称	SmilChr01G004518
描述	probable protein S-acyltransferase 1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63306648 - 63309440 / `+`

ID 对照

NCBI Gene ID	`LOC131003493`
GeneID	`131003493`
locus_tag	`-`
NCBI Name	`LOC131003493`
原始查询	`LOC131003493`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable protein S-acyltransferase 1
产物	probable protein S-acyltransferase 1
Arabidopsis	`AT5G05070` (AT5G05070) DHHC-type zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:830389] identity=53.1; qcov=0.942; evalue=5.72e-143; confidence=high
Rice	`Os12g0131200` - identity=50.8; qcov=0.88; evalue=1.13e-122; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0005794 (Golgi apparatus); GO:0006612 (protein targeting to membrane); GO:0018230 (peptidyl-L-cysteine S-palmitoylation); GO:0019706 (protein-cysteine S-palmitoyltransferase activity)
KEGG	-
Pfam	PF01529 (DHHC)
InterPro	-
eggNOG	-
NR	GeneID:131003493

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057785969.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057785969.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057785969.1`
4	Nucleus	细胞核	0.00000	`XP_057785969.1`
5	Chromosome	染色体	0.00000	`XP_057785969.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63307630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:63308200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,C83
`Chr1:63308286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:63308335`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B26,C40,C61
`Chr1:63308365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B26,C40,C61
`Chr1:63308626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,D11
`Chr1:63308713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,C83
`Chr1:63308728`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B1,B109,B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057785969.1

443 aa

222

443

DHHC

PF01529 DHHC 181-302 aa

XP_057785974.1

443 aa

222

443

DHHC

PF01529 DHHC 181-302 aa

XP_057785983.1

416 aa

208

416

DHHC

PF01529 DHHC 154-275 aa

XP_057785991.1

416 aa

208

416

DHHC

PF01529 DHHC 154-275 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057785969.1`	Pfam	`PF01529`	DHHC	Family	181	302	2.8e-35	122.0	DHHC palmitoyltransferase
`XP_057785974.1`	Pfam	`PF01529`	DHHC	Family	181	302	2.8e-35	122.0	DHHC palmitoyltransferase
`XP_057785983.1`	Pfam	`PF01529`	DHHC	Family	154	275	2.5e-35	122.2	DHHC palmitoyltransferase
`XP_057785991.1`	Pfam	`PF01529`	DHHC	Family	154	275	2.5e-35	122.2	DHHC palmitoyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057930000.1
CAAAAATCAAACATATTTATTACCAGCGCGCGCGCGAAAAATCCGCATAAATTAGGAGAAGATGAAAACCAACCGTTTTGCAACTTCCAAGAATAGTGGGATTTGTAAGAGAAGCAGAGAGACATGGCTAGGAAATCATTTACGTTGTGAGAGAGGGCTGTAGAGCAGAGGGGGCCAGTGGCTAATGGTGAGGCAAAAATTACCCAGAAAAAAGAAAATTTAAATAAAAAAGGGAAGTTTTTTGCCATCCTCTCCATGTC...

XM_057930008.1
AATCAAACATATTTATTACCAGCGCGCGCGCGAAAAATCCGCATAAATTAGGAGAAGATGAAAACCAACCGTTTTGCAACTTCCAAGAATAGTGGGATTTGTAAGAGAAGCAGAGAGACATGGCTAGGAAATCATTTACGTTGTGAGAGAGGGCTGTAGAGCAGAGGGGGCCAGTGGCTAATGGTGAGGCAAAAATTACCCAGAAAAAAGAAAATTTAAATAAAAAAGGGAAGTTTTTTGCCATCCTCTCCATGTCTCCA...

CDS

4 records

下载 CDS FASTA

LOC131003493
ATGGGTGGGCAAAAGTTCCCAGATTTTGCTCCACCCTCTAAATGCACTGATCGTCCCTCGGCGAAGAAAAGGCTCTATCAAGTTTGGAGGGGTCGAAATAAATTTTTATGTGGCGGGAGATTGGTCTTTGGTCCTGATGCAGGATCAGTCGTTTTGTCGACGGTCCTCATAGGTGGTCCTGCATTAACATTCTGTATAAAGATGCTTATGAGGATCTCAGAGGTCGATTTCTTGTACGGGCGCATTGTATTGACTGGGGG...

Protein

4 records

下载 Protein FASTA

XP_057785969.1
MGGQKFPDFAPPSKCTDRPSAKKRLYQVWRGRNKFLCGGRLVFGPDAGSVVLSTVLIGGPALTFCIKMLMRISEVDFLYGRIVLTGGFFLTFLVGKPLYMLHLSGIILNEFSHLSLHCLQALTFLYMTAARNPGIVPRNNRPPVDCEVESVRSMDWVSCGTPSFKIPRTKDVMVNGHTVRVKFCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGVRNYRTFFLFVTTSTALCIYVFTFSLLNLLKKPGPLWRNM...

XP_057785974.1
MGGQKFPDFAPPSKCTDRPSAKKRLYQVWRGRNKFLCGGRLVFGPDAGSVVLSTVLIGGPALTFCIKMLMRISEVDFLYGRIVLTGGFFLTFLVGKPLYMLHLSGIILNEFSHLSLHCLQALTFLYMTAARNPGIVPRNNRPPVDCEVESVRSMDWVSCGTPSFKIPRTKDVMVNGHTVRVKFCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGVRNYRTFFLFVTTSTALCIYVFTFSLLNLLKKPGPLWRNM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器