Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004495`

染色体: Chr01 坐标: 63069932-63072615 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004495`
名称	SmilChr01G004495
描述	SNF1-related protein kinase catalytic subunit alpha KIN10-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63069932 - 63072615 / `-`

ID 对照

NCBI Gene ID	`LOC131003671`
GeneID	`131003671`
locus_tag	`-`
NCBI Name	`LOC131003671`
原始查询	`LOC131003671`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SNF1-related protein kinase catalytic subunit alpha KIN10-like
产物	SNF1-related protein kinase catalytic subunit alpha KIN10-like
Arabidopsis	`AT3G01090` (KIN10) SNF1 kinase homolog 10 [Source:NCBI gene (formerly Entrezgene);Acc:821259] identity=71; qcov=0.665; evalue=5.84e-135; confidence=high
Rice	`Os05g0530500` (SNRK1A) - identity=70.5; qcov=0.67; evalue=7.55e-133; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG	-
Pfam	PF00069 (Pkinase); PF01163 (RIO1); PF02149 (KA1); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like)
InterPro	-
eggNOG	-
NR	GeneID:131003671

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057786202.1`
2	Cytoplasm	细胞质	0.80000	`XP_057786202.1`
3	Nucleus	细胞核	0.60000	`XP_057786202.1`
4	Chromosome	染色体	0.00000	`XP_057786202.1`
5	Centromere	着丝粒	0.00000	`XP_057786202.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63070296`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,B20
`Chr1:63070400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:63070813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr1:63070861`	`ACT`	`A`	2bp_deletion	frameshift_variant	3	B31,B47,D1
`Chr1:63070861`	`ACT`	`A`	2bp_deletion	CDS_variant	3	B31,B47,D1
`Chr1:63070989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr1:63071046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr1:63071353`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B81,C12,C38,C5
`Chr1:63072221`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057786202.1

394 aa

197

394

Pkinase

PK_Tyr_Ser-Thr

RIO1

Kinase-like

KA1

PF00069 Pkinase 16-269 aa PF07714 PK_Tyr_Ser-Thr 17-263 aa PF01163 RIO1 57-159 aa PF14531 Kinase-like 92-220 aa PF02149 KA1 353-389 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057786202.1`	Pfam	`PF00069`	Pkinase	Domain	16	269	4.8e-80	269.5	Protein kinase domain
`XP_057786202.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	17	263	1.4e-44	153.1	Protein tyrosine and serine/threonine kinase
`XP_057786202.1`	Pfam	`PF01163`	RIO1	Domain	57	159	5.1e-06	26.9	RIO domain
`XP_057786202.1`	Pfam	`PF14531`	Kinase-like	Family	92	220	4.7e-08	33.3	Kinase-like
`XP_057786202.1`	Pfam	`PF02149`	KA1	Domain	353	389	3.7e-06	27.2	Kinase associated domain 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057930219.1
AACTTATTTTGTGTGTACGACTTTATTTGTTGGCTTTTGCTTTGACGTCGCAAACAAAGACATGATGCATAGTTTAGTGGTTGTCTGAATCAGCAAGCATACACAAATAGCAATAACCTTACAACATCTCCATATCGTTAGAGCTTAGCCTGTGTCTCCGCTGCAATTTCACGCTGATCCAAGTATATTTGGGAGATGGCGAGTCGGCGGCGGCGTTCTTCCCACAACGAGATACCACACTACAAGATCGGAAAGACTCT...

CDS

1 records

下载 CDS FASTA

LOC131003671
ATGGCGAGTCGGCGGCGGCGTTCTTCCCACAACGAGATACCACACTACAAGATCGGAAAGACTCTGGGAATTGGGGCATTCGGTAAAGTGAAGCTAGCTGTTCATACCTTAACTGGGATCAAAGTCGCCATCAAGATTCTTGATCGCCTCACAATAGATACCCAGGGCCACCAAGCAGAAAAAGTAAGAAAGGAGATGAACATAATGAGACAGCTTGATCATCCCCACATAGTCCGATTGTTGGAGGTGATCGACACTCC...

Protein

1 records

下载 Protein FASTA

XP_057786202.1
MASRRRRSSHNEIPHYKIGKTLGIGAFGKVKLAVHTLTGIKVAIKILDRLTIDTQGHQAEKVRKEMNIMRQLDHPHIVRLLEVIDTPEKVYVVMEYMNSGELFYYLTEKGKLHEHEARRLFQQIISGVDYCHRHLVVHRDLKPENLLLDSDHNVKIADFGLGNIMRDGHFLKTCCGSPNYAAPELISRRLYAGPEVDVWSCGVILYALLCGRLPFDDDNLSSLYAKIKSGVYHSPNHLSESARHLISRILVVDPMKRISI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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