当前解析结果
SmilChr01G004505| 统一新 Gene ID | SmilChr01G004505 |
|---|---|
| 名称 | SmilChr01G004505 |
| 描述 | probable E3 ubiquitin-protein ligase RHC1A |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 63164368 - 63166393 / - |
| NCBI Gene ID | LOC131003747 |
|---|---|
| GeneID | 131003747 |
| locus_tag | - |
| NCBI Name | LOC131003747 |
| 原始查询 | LOC131003747 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable E3 ubiquitin-protein ligase RHC1A |
| 产物 | probable E3 ubiquitin-protein ligase RHC1A |
| Arabidopsis | AT2G40830 (RHC1A)RING-H2 finger C1A [Source:NCBI gene (formerly Entrezgene);Acc:818680] identity=39.5; qcov=1.11; evalue=3.54e-62; confidence=medium |
| Rice | Os03g0351800 (OsRFP)- identity=40.1; qcov=0.958; evalue=8.41e-65; confidence=medium |
| GO | GO:0005654 (nucleoplasm); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0016567 (protein ubiquitination); GO:0045893 (positive regulation of DNA-templated transcription); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12861 (zf-ANAPC11); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14369 (Zn_ribbon_19); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131003747 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057786279.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057786279.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057786279.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057786279.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057786279.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:63164829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr1:63164844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,D11 |
Chr1:63164890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr1:63164979 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B35 |
Chr1:63164979 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B35 |
Chr1:63165225 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B31,B47 |
Chr1:63165277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr1:63165323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B31,B47,D1 |
Chr1:63165426 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B26,B63,B73,B74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057786279.1PF14369
Zn_ribbon_19 8-37 aa
PF12861
zf-ANAPC11 163-211 aa
PF13639
zf-RING_2 166-208 aa
PF17123
zf-RING_11 167-194 aa
PF13445
zf-RING_UBOX 167-205 aa
PF00097
zf-C3HC4 167-207 aa
PF13923
zf-C3HC4_2 167-207 aa
XP_057786282.1PF14369
Zn_ribbon_19 8-37 aa
PF12861
zf-ANAPC11 163-211 aa
PF13639
zf-RING_2 166-208 aa
PF17123
zf-RING_11 167-194 aa
PF13445
zf-RING_UBOX 167-205 aa
PF00097
zf-C3HC4 167-207 aa
PF13923
zf-C3HC4_2 167-207 aa
XP_057786286.1PF14369
Zn_ribbon_19 8-37 aa
PF12861
zf-ANAPC11 163-211 aa
PF13639
zf-RING_2 166-208 aa
PF17123
zf-RING_11 167-194 aa
PF13445
zf-RING_UBOX 167-205 aa
PF00097
zf-C3HC4 167-207 aa
PF13923
zf-C3HC4_2 167-207 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057786279.1 |
Pfam | PF14369 |
Zn_ribbon_19 | Domain | 8 | 37 | 1.8e-07 | 31.9 | zinc-ribbon |
XP_057786279.1 |
Pfam | PF12861 |
zf-ANAPC11 | Domain | 163 | 211 | 3.6e-06 | 27.6 | Anaphase-promoting complex subunit 11 RING-H2 finger |
XP_057786279.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 166 | 208 | 2.6e-13 | 50.7 | Ring finger domain |
XP_057786279.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 167 | 194 | 9.4e-09 | 35.5 | RING-like zinc finger |
XP_057786279.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 167 | 205 | 5.5e-07 | 30.2 | RING-type zinc-finger |
XP_057786279.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 167 | 207 | 7e-07 | 29.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057786279.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 167 | 207 | 1.8e-08 | 34.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057786282.1 |
Pfam | PF14369 |
Zn_ribbon_19 | Domain | 8 | 37 | 1.8e-07 | 31.9 | zinc-ribbon |
XP_057786282.1 |
Pfam | PF12861 |
zf-ANAPC11 | Domain | 163 | 211 | 3.6e-06 | 27.6 | Anaphase-promoting complex subunit 11 RING-H2 finger |
XP_057786282.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 166 | 208 | 2.6e-13 | 50.7 | Ring finger domain |
XP_057786282.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 167 | 194 | 9.4e-09 | 35.5 | RING-like zinc finger |
XP_057786282.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 167 | 205 | 5.5e-07 | 30.2 | RING-type zinc-finger |
XP_057786282.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 167 | 207 | 7e-07 | 29.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057786282.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 167 | 207 | 1.8e-08 | 34.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057786286.1 |
Pfam | PF14369 |
Zn_ribbon_19 | Domain | 8 | 37 | 1.8e-07 | 31.9 | zinc-ribbon |
XP_057786286.1 |
Pfam | PF12861 |
zf-ANAPC11 | Domain | 163 | 211 | 3.6e-06 | 27.6 | Anaphase-promoting complex subunit 11 RING-H2 finger |
XP_057786286.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 166 | 208 | 2.6e-13 | 50.7 | Ring finger domain |
XP_057786286.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 167 | 194 | 9.4e-09 | 35.5 | RING-like zinc finger |
XP_057786286.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 167 | 205 | 5.5e-07 | 30.2 | RING-type zinc-finger |
XP_057786286.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 167 | 207 | 7e-07 | 29.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057786286.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 167 | 207 | 1.8e-08 | 34.7 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。