Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004549

染色体: Chr01 坐标: 63608236-63610782 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004549
名称SmilChr01G004549
描述uncharacterized SmilChr01G004549
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向63608236 - 63610782 / -

ID 对照

NCBI Gene IDLOC131003762
GeneID131003762
locus_tag-
NCBI NameLOC131003762
原始查询LOC131003762

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述FAR1-related sequence 3 [Source:NCBI gene (formerly Entrezgene);Acc:817253]; symbol=FRS3; hit=AT2G27110; species=arabidopsis; confidence=low
产物FAR1-related sequence 3 [Source:NCBI gene (formerly Entrezgene);Acc:817253]; symbol=FRS3; hit=AT2G27110; species=arabidopsis; confidence=low
ArabidopsisAT2G27110 (FRS3)
FAR1-related sequence 3 [Source:NCBI gene (formerly Entrezgene);Acc:817253]
identity=47.2; qcov=0.396; evalue=3.22e-20; confidence=low
RiceOs08g0530500
-
identity=39.2; qcov=0.399; evalue=2.76e-17; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131003762

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057786296.1
2 Nucleoplasm 核质 1.00000 XP_057786310.1
3 Cytoplasm 细胞质 0.80000 XP_057786296.1
4 Cytosol 细胞质基质 0.40000 XP_057786296.1
5 Chromosome 染色体 0.00000 XP_057786296.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:63608747 TTG T 2bp_deletion frameshift_variant 6 A23,B105,B109,B27,B75,C47
Chr1:63608899 C T EMS_canonical_SNV CDS_variant 1 B65
Chr1:63609169 G A EMS_canonical_SNV CDS_variant 2 B133,C14
Chr1:63609241 G A EMS_canonical_SNV CDS_variant 4 B122,B132,B24,B83
Chr1:63609243 G A EMS_canonical_SNV CDS_variant 3 B127,B54,C75
Chr1:63609508 C T EMS_canonical_SNV CDS_variant 1 B35
Chr1:63610149 C T EMS_canonical_SNV CDS_variant 3 B61,B87,B94
Chr1:63610187 G A EMS_canonical_SNV CDS_variant 4 B87,B98,C74,D3
Chr1:63610350 G A EMS_canonical_SNV CDS_variant 1 C83
Chr1:63610396 AG A 1bp_deletion frameshift_variant 1 B51
Chr1:63610396 AG A 1bp_deletion CDS_variant 1 B51

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057930313.1
CTAATGTTTACAGAAATTAACATGTCCAAATTATGCATAACTGAACGCTAACGATTCCGATTTGTAACCTACAACGTTATCGGCGATAAACGAAACCGGATTCCACACTCCACAATAACACTAGCAAGATTGTACAGGGAAAAAAAATTCGATCTTTTCGAATCAATTTCAAGAAAATTTATCCATTGCTCCAAATTCTCGACAGCCATTACTAATGGAGTGGAGTTGAGAGAGCTGAAAGCTTAATTAAAAACGATGAT...
XM_057930319.1
ATTATGCATAACTGAACGCTAACGATTCCGATTTGTAACCTACAACGTTATCGGCGATAAACGAAACCGGATTCCACACTCCACAATAACACTAGCAAGATTGTACAGGGAAAAAAAATTCGATCTTTTCGAATCAATTTCAAGAAAATTTATCCATTGCTCCAAATTCTCGACAGCCATTACTAATGGAGTGGAGTTGAGAGAGCTGAAAGCTTAATTAAAAACGATGATTGGGGAAACAACGCTGTCGGAGCATCTCC...

CDS

3 records

下载 CDS FASTA
LOC131003762
ATGATTGGGGAAACAACGCTGTCGGAGCATCTCCACAAGCTAATTGGGGTAAAATGTGCGCAGAAGCTTGAAAACCTTCTGCAATTGCTGTGGCAAACCCGAAAAATTGGTCTCTCGAATTCGCAGAAGTCTTCCATCCACTCCCTTCTCGATCTTCCTTCGCCCCGCGACGTAGACCCAGTTTTGGCGTGCCTTCGTTTGATTATCAGGAATTGCGTGCACAAAAACATAGAAGAATGTGATGGTTTGAAGCTTTTTCC...
LOC131003762
ATGATTGGGGAAACAACGCTGTCGGAGCATCTCCACAAGCTAATTGGGGTAAAATGTGCGCAGAAGCTTGAAAACCTTCTGCAATTGCTGTGGCAAACCCGAAAAATTGGTCTCTCGAATTCGCAGAAGTCTTCCATCCACTCCCTTCTCGATCTTCCTTCGCCCCGCGACGTAGACCCAGTTTTGGCGTGCCTTCGTTTGATTATCAGGAATTGCGTGCACAAAAACATAGAAGAATGTGATGGTTTGAAGCTTTTTCC...

Protein

3 records

下载 Protein FASTA
XP_057786296.1
MIGETTLSEHLHKLIGVKCAQKLENLLQLLWQTRKIGLSNSQKSSIHSLLDLPSPRDVDPVLACLRLIIRNCVHKNIEECDGLKLFPADLPLQLQRMLLAQLQKLRSYWKEELSREPNASGWTSHVNISSSAVCGSLLSLQVDPASRFNSPNIGGRIPITAERNVACFPPELTLQSDIGPTEIPRVLPRLKSMTWTVENKGEMPTNRVAIITLKLQDYSKSPWKEMEVKFELSRDTVEAVLRSMSYISEQLSQFVRVPFS...
XP_057786302.1
MIGETTLSEHLHKLIGVKCAQKLENLLQLLWQTRKIGLSNSQKSSIHSLLDLPSPRDVDPVLACLRLIIRNCVHKNIEECDGLKLFPADLPLQLQRMLLAQLQKLRSYWKEELSREPNASGWTSHVNISSSAVCGSLLSLQVDPASRFNSPNIGGRIPITAERNVACFPPELTLQSDIGPTEIPRVLPRLKSMTWTVENKGEMPTNRVAIITLKLQDYSKSPWKEMEVKFELSRDTVEAVLRSMSYISEQLSQFNESCLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器