Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004560`

染色体: Chr01 坐标: 63681259-63684041 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004560`
名称	SmilChr01G004560
描述	protein PLANT CADMIUM RESISTANCE 10-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63681259 - 63684041 / `+`

ID 对照

NCBI Gene ID	`LOC131004163`
GeneID	`131004163`
locus_tag	`-`
NCBI Name	`LOC131004163`
原始查询	`LOC131004163`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein PLANT CADMIUM RESISTANCE 10-like
产物	protein PLANT CADMIUM RESISTANCE 10-like
Arabidopsis	`AT2G40935` (AT2G40935) PLAC8 family protein [Source:NCBI gene (formerly Entrezgene);Acc:818692] identity=61.5; qcov=1; evalue=8.85e-81; confidence=high
Rice	`Os01g0267400` - identity=61.5; qcov=0.652; evalue=6.66e-52; confidence=high
GO	-
KEGG	-
Pfam	PF04749 (PLAC8)
InterPro	-
eggNOG	-
NR	GeneID:131004163

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057786773.1`
2	Vacuole	液泡	0.40000	`XP_057786773.1`
3	Vacuole membrane	液泡膜	0.40000	`XP_057786773.1`
4	Nucleus	细胞核	0.00000	`XP_057786773.1`
5	Chromosome	染色体	0.00000	`XP_057786773.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63682592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr1:63682613`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr1:63683141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B46,C60,C64,C66
`Chr1:63683272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:63683300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr1:63683847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,B37
`Chr1:63683920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057786773.1

187 aa

187

PLAC8

PF04749 PLAC8 45-158 aa

XP_057786777.1

187 aa

187

PLAC8

PF04749 PLAC8 45-158 aa

XP_057786781.1

187 aa

187

PLAC8

PF04749 PLAC8 45-158 aa

XP_057786787.1

187 aa

187

PLAC8

PF04749 PLAC8 45-158 aa

XP_057786791.1

187 aa

187

PLAC8

PF04749 PLAC8 45-158 aa

XP_057786796.1

187 aa

187

PLAC8

PF04749 PLAC8 45-158 aa

XP_057786801.1

187 aa

187

PLAC8

PF04749 PLAC8 45-158 aa

XP_057786807.1

187 aa

187

PLAC8

PF04749 PLAC8 45-158 aa

XP_057786814.1

187 aa

187

PLAC8

PF04749 PLAC8 45-158 aa

XP_057786819.1

187 aa

187

PLAC8

PF04749 PLAC8 45-158 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057786773.1`	Pfam	`PF04749`	PLAC8	Family	45	158	7.4e-28	98.2	PLAC8 family
`XP_057786777.1`	Pfam	`PF04749`	PLAC8	Family	45	158	7.4e-28	98.2	PLAC8 family
`XP_057786781.1`	Pfam	`PF04749`	PLAC8	Family	45	158	7.4e-28	98.2	PLAC8 family
`XP_057786787.1`	Pfam	`PF04749`	PLAC8	Family	45	158	7.4e-28	98.2	PLAC8 family
`XP_057786791.1`	Pfam	`PF04749`	PLAC8	Family	45	158	7.4e-28	98.2	PLAC8 family
`XP_057786796.1`	Pfam	`PF04749`	PLAC8	Family	45	158	7.4e-28	98.2	PLAC8 family
`XP_057786801.1`	Pfam	`PF04749`	PLAC8	Family	45	158	7.4e-28	98.2	PLAC8 family
`XP_057786807.1`	Pfam	`PF04749`	PLAC8	Family	45	158	7.4e-28	98.2	PLAC8 family
`XP_057786814.1`	Pfam	`PF04749`	PLAC8	Family	45	158	7.4e-28	98.2	PLAC8 family
`XP_057786819.1`	Pfam	`PF04749`	PLAC8	Family	45	158	7.4e-28	98.2	PLAC8 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XM_057930794.1
ATGTATGAACTTTGCTTAAAAATATAACGCTTACAGAAAGTCGTCACGCGATCTTTAATTCTGGGCTTAAATAAAATAAATTTAAGCAATCTCACGGCTTCTATTTCAGACGACAAACATTTATTATAATCTCCTTCCTCAAATTAGAAAATTGTCGACAATTTCTATTTTCTCTGCAGTTCTCAGCTGTTCGTGATCCCGCTTGGCCGCTCCTACATTTTTTTATTAGCTTATTTACGGATGATACTCCTTTAGAATTC...

XM_057930824.1
GTCACGCGATCTTTAATTCTGGGCTTAAATAAAATAAATTTAAGCAATCTCACGGCTTCTATTTCAGACGACAAACATTTATTATAATCTCCTTCCTCAAATTAGAAAATTGTCGACAATTTCTATTTTCTCTGCAGTTCTCAGATTGCTGCTCAAGCTCTTGAACAGGACAGAGGTGTGAGTTCTCTTGTCTTCAAGTAATATGGTGGGCCAGAACACATATGTTCCACCACGTTACATTCCCCTCGGGCAGTCAGATG...

CDS

10 records

下载 CDS FASTA

LOC131004163
ATGGTGGGCCAGAACACATATGTTCCACCACGTTACATTCCCCTCGGGCAGTCAGATGCAGAAGCAGATGCAGTAGCTCCTCCTACAGATGTTGATCCTAGACCACAGCACAACAATAACGTTCCAGGGCAGTGGTCTTCGGGAATCTGTGCTTGTTTCGATGATATGCAGAGCTGTTGTGTTGGTCTTCTTTGCCCGTGCTATCTTTTCGGGAGAAATGCAGAGTCTTTGGGTTCTGGAACTCTGATAGGATCCTGTAC...

Protein

10 records

下载 Protein FASTA

XP_057786773.1
MVGQNTYVPPRYIPLGQSDAEADAVAPPTDVDPRPQHNNNVPGQWSSGICACFDDMQSCCVGLLCPCYLFGRNAESLGSGTLIGSCTMHFVLWAVVNTICCVMTEGVMLGAPGCFVACYACGYRRTLRESYNLEEAPCGDFVTHFFCHLCAMCQEYREIRERSQDLNSNTVEVAAPPVQKMEPASAK

XP_057786777.1
MVGQNTYVPPRYIPLGQSDAEADAVAPPTDVDPRPQHNNNVPGQWSSGICACFDDMQSCCVGLLCPCYLFGRNAESLGSGTLIGSCTMHFVLWAVVNTICCVMTEGVMLGAPGCFVACYACGYRRTLRESYNLEEAPCGDFVTHFFCHLCAMCQEYREIRERSQDLNSNTVEVAAPPVQKMEPASAK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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