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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004597

染色体: Chr01 坐标: 63944759-63947719 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004597
名称SmilChr01G004597
描述pentatricopeptide repeat-containing protein At2g18940, chloroplastic
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向63944759 - 63947719 / -

ID 对照

NCBI Gene IDLOC131004338
GeneID131004338
locus_tag-
NCBI NameLOC131004338
原始查询LOC131004338

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g18940, chloroplastic
产物pentatricopeptide repeat-containing protein At2g18940%2C chloroplastic
ArabidopsisAT2G18940 (AT2G18940)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816411]
identity=62; qcov=1.01; evalue=0; confidence=high
RiceOs05g0275000
-
identity=52.4; qcov=0.858; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131004338

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057786969.1
2 Chloroplast 叶绿体 0.60000 XP_057786969.1
3 Nucleus 细胞核 0.00000 XP_057786969.1
4 Chromosome 染色体 0.00000 XP_057786969.1
5 Centromere 着丝粒 0.00000 XP_057786969.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:63945029 C T EMS_canonical_SNV CDS_variant 2 B84,D11
Chr1:63945309 C T EMS_canonical_SNV CDS_variant 1 C17
Chr1:63945389 G A EMS_canonical_SNV CDS_variant 2 B84,C1
Chr1:63945404 G A EMS_canonical_SNV CDS_variant 1 B104
Chr1:63945420 GC G 1bp_deletion frameshift_variant 1 B40
Chr1:63945420 GC G 1bp_deletion CDS_variant 1 B40
Chr1:63945535 G A EMS_canonical_SNV CDS_variant 2 B25,D7
Chr1:63945587 G A EMS_canonical_SNV CDS_variant 5 B121,B21,B28,C16,C7
Chr1:63945599 G A EMS_canonical_SNV CDS_variant 2 B84,C1
Chr1:63945759 G A EMS_canonical_SNV CDS_variant 3 B110,B56,B96
Chr1:63945893 C T EMS_canonical_SNV CDS_variant 1 C17
Chr1:63946070 G A EMS_canonical_SNV CDS_variant 4 B136,B16,B78,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057786969.1
838 aa
N
1
419
838
TPR_24
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR
TPR_24
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_long
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_3
PPR
PPR_3
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR_1
PPR
C
PF23276 TPR_24 200-322 aa PF13812 PPR_3 217-273 aa PF13041 PPR_2 225-271 aa PF01535 PPR 228-255 aa PF13041 PPR_2 259-307 aa PF01535 PPR 262-292 aa PF13812 PPR_3 284-344 aa PF01535 PPR 298-327 aa PF23276 TPR_24 299-375 aa PF17177 PPR_long 313-430 aa PF12854 PPR_1 326-359 aa PF13041 PPR_2 330-377 aa PF01535 PPR 333-363 aa PF13812 PPR_3 348-378 aa PF13041 PPR_2 365-413 aa PF01535 PPR 368-398 aa PF17177 PPR_long 386-513 aa PF13812 PPR_3 392-449 aa PF23276 TPR_24 392-467 aa PF12854 PPR_1 396-429 aa PF13041 PPR_2 400-448 aa PF01535 PPR 403-433 aa PF13041 PPR_2 435-474 aa PF01535 PPR 439-468 aa PF13812 PPR_3 456-484 aa PF13041 PPR_2 470-517 aa PF01535 PPR 473-503 aa PF13812 PPR_3 488-518 aa PF01535 PPR 509-538 aa PF13812 PPR_3 530-587 aa PF13041 PPR_2 540-589 aa PF01535 PPR 544-573 aa PF13812 PPR_3 635-692 aa PF13041 PPR_2 645-694 aa PF01535 PPR 648-678 aa PF12854 PPR_1 677-706 aa PF01535 PPR 683-706 aa PF12854 PPR_1 714-744 aa PF13812 PPR_3 714-758 aa PF13041 PPR_2 715-750 aa PF01535 PPR 718-748 aa PF13041 PPR_2 750-799 aa PF01535 PPR 753-783 aa PF12854 PPR_1 782-810 aa PF01535 PPR 789-816 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057786969.1 Pfam PF23276 TPR_24 Repeat 200 322 2.4e-40 138.3 Pentatricopeptide repeat-containing protein
XP_057786969.1 Pfam PF13812 PPR_3 Repeat 217 273 2.1e-98 323.1 Pentatricopeptide repeat domain
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 225 271 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 228 255 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 259 307 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 262 292 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF13812 PPR_3 Repeat 284 344 2.1e-98 323.1 Pentatricopeptide repeat domain
XP_057786969.1 Pfam PF01535 PPR Repeat 298 327 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF23276 TPR_24 Repeat 299 375 2.4e-40 138.3 Pentatricopeptide repeat-containing protein
XP_057786969.1 Pfam PF17177 PPR_long Repeat 313 430 1.9e-38 132.7 Pentacotripeptide-repeat region of PRORP
XP_057786969.1 Pfam PF12854 PPR_1 Repeat 326 359 3.1e-101 331.5 PPR repeat
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 330 377 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 333 363 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF13812 PPR_3 Repeat 348 378 2.1e-98 323.1 Pentatricopeptide repeat domain
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 365 413 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 368 398 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF17177 PPR_long Repeat 386 513 1.9e-38 132.7 Pentacotripeptide-repeat region of PRORP
XP_057786969.1 Pfam PF13812 PPR_3 Repeat 392 449 2.1e-98 323.1 Pentatricopeptide repeat domain
XP_057786969.1 Pfam PF23276 TPR_24 Repeat 392 467 2.4e-40 138.3 Pentatricopeptide repeat-containing protein
XP_057786969.1 Pfam PF12854 PPR_1 Repeat 396 429 3.1e-101 331.5 PPR repeat
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 400 448 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 403 433 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 435 474 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 439 468 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF13812 PPR_3 Repeat 456 484 2.1e-98 323.1 Pentatricopeptide repeat domain
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 470 517 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 473 503 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF13812 PPR_3 Repeat 488 518 2.1e-98 323.1 Pentatricopeptide repeat domain
XP_057786969.1 Pfam PF01535 PPR Repeat 509 538 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF13812 PPR_3 Repeat 530 587 2.1e-98 323.1 Pentatricopeptide repeat domain
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 540 589 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 544 573 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF13812 PPR_3 Repeat 635 692 2.1e-98 323.1 Pentatricopeptide repeat domain
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 645 694 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 648 678 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF12854 PPR_1 Repeat 677 706 3.1e-101 331.5 PPR repeat
XP_057786969.1 Pfam PF01535 PPR Repeat 683 706 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF12854 PPR_1 Repeat 714 744 3.1e-101 331.5 PPR repeat
XP_057786969.1 Pfam PF13812 PPR_3 Repeat 714 758 2.1e-98 323.1 Pentatricopeptide repeat domain
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 715 750 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 718 748 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF13041 PPR_2 Repeat 750 799 1.9e-131 428.8 PPR repeat family
XP_057786969.1 Pfam PF01535 PPR Repeat 753 783 1e-107 345.8 PPR repeat
XP_057786969.1 Pfam PF12854 PPR_1 Repeat 782 810 3.1e-101 331.5 PPR repeat
XP_057786969.1 Pfam PF01535 PPR Repeat 789 816 1e-107 345.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057930986.1
CACACACCAAAACAAAGATAGGATACGGTGCAGCAAGAAGCACTAGTGGACCTCATAACAACCGAAATCCCCAAAACACCATACACTGTGTTTATCTCTTTCAATCATTACTTCAAACACTTTCTGCGCCATCTTTCTCATGTAATCCCCAGCTCCCCAATCTTCGCCATCATTCAAAACATCCTTCGCTCCAATTCAATGGAAGGAAACCTTTTCCCCAACCGACCAGCATTCCCAATCCAGCCCACCAAACCCGCTTC...

CDS

1 records

下载 CDS FASTA
LOC131004338
ATGGAAGGAAACCTTTTCCCCAACCGACCAGCATTCCCAATCCAGCCCACCAAACCCGCTTCCCACCAACGCCTCAAATTCAACACCTCCAGCCTCCCTCTCCCGCCTCTGCTGCCGTCGCAGCAGCAGCAGCAGCAGCAATCTTCCCACTCTTTCCCGCTCGATTCCCTCCTCCAGCACCTCCTGCACGTATCTCACCCTGTCAAATCATCTCTAGCTTCTTCCCACGTTCTACCTTCCCGCAGCCAAGACTCCTTGTC...

Protein

1 records

下载 Protein FASTA
XP_057786969.1
MEGNLFPNRPAFPIQPTKPASHQRLKFNTSSLPLPPLLPSQQQQQQQSSHSFPLDSLLQHLLHVSHPVKSSLASSHVLPSRSQDSLSAHFRKDASGSSIAIPVIGDRAVTDGGSLDFLPLKCKLILDSILELPVSELRSFFDSAKFELLREVDLISLLKGLDMSGHSDRAVLLFEWVVLNLDACNSDRLDNQIIELMVKILGKESQHSVASKLFDVIPVRDFTLDVRAWTTILHSYSRSGKYEKAIALFDFMKLRDLSPT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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