当前解析结果
SmilChr01G004596| 统一新 Gene ID | SmilChr01G004596 |
|---|---|
| 名称 | SmilChr01G004596 |
| 描述 | adagio protein 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 63940981 - 63944699 / + |
| NCBI Gene ID | LOC131004387 |
|---|---|
| GeneID | 131004387 |
| locus_tag | - |
| NCBI Name | LOC131004387 |
| 原始查询 | LOC131004387 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | adagio protein 1-like |
| 产物 | adagio protein 1-like |
| Arabidopsis | AT5G57360 (ZTL)Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835842] identity=82.4; qcov=0.997; evalue=0; confidence=high |
| Rice | Os06g0694000 (OsZTL2)- identity=79.5; qcov=0.936; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0007623 (circadian rhythm); GO:0009637 (response to blue light); GO:0019005 (SCF ubiquitin ligase complex) |
| KEGG | smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00646 (F-box); PF00989 (PAS); PF07646 (Kelch_2); PF08447 (PAS_3); PF12937 (F-box-like); PF13426 (PAS_9); PF24681 (Kelch_KLHDC2_KLHL20_DRC7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131004387 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057787050.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057787050.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057787050.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057787050.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057787050.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:63941485 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:63942782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:63942830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B84,C1,D11 |
Chr1:63943053 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr1:63943352 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr1:63943718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,C46 |
Chr1:63943901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C27,C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787050.1PF00989
PAS 45-161 aa
PF13426
PAS_9 53-162 aa
PF08447
PAS_3 67-161 aa
PF00646
F-box 219-253 aa
PF12937
F-box-like 219-257 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 288-482 aa
PF07646
Kelch_2 464-514 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 466-620 aa
PF07646
Kelch_2 531-578 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787050.1 |
Pfam | PF00989 |
PAS | Domain | 45 | 161 | 1.1e-07 | 32.5 | PAS fold |
XP_057787050.1 |
Pfam | PF13426 |
PAS_9 | Domain | 53 | 162 | 1.6e-15 | 57.9 | PAS domain |
XP_057787050.1 |
Pfam | PF08447 |
PAS_3 | Domain | 67 | 161 | 1.3e-07 | 32.5 | PAS fold |
XP_057787050.1 |
Pfam | PF00646 |
F-box | Domain | 219 | 253 | 1e-06 | 29.1 | F-box domain |
XP_057787050.1 |
Pfam | PF12937 |
F-box-like | Domain | 219 | 257 | 1.8e-11 | 44.3 | F-box-like |
XP_057787050.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 288 | 482 | 1.8e-54 | 185.1 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057787050.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 464 | 514 | 2.3e-28 | 97.4 | Kelch motif |
XP_057787050.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 466 | 620 | 1.8e-54 | 185.1 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057787050.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 531 | 578 | 2.3e-28 | 97.4 | Kelch motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。