当前解析结果
SmilChr01G004613| 统一新 Gene ID | SmilChr01G004613 |
|---|---|
| 名称 | SmilChr01G004613 |
| 描述 | uncharacterized SmilChr01G004613 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 64086966 - 64088684 / - |
| NCBI Gene ID | LOC131004545 |
|---|---|
| GeneID | 131004545 |
| locus_tag | - |
| NCBI Name | LOC131004545 |
| 原始查询 | LOC131004545 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | oxysterol-binding 4B-like protein [Source:NCBI gene (formerly Entrezgene);Acc:3769784]; symbol=AT4G25845; hit=AT4G25845; species=arabidopsis; confidence=weak |
| 产物 | oxysterol-binding 4B-like protein [Source:NCBI gene (formerly Entrezgene);Acc:3769784]; symbol=AT4G25845; hit=AT4G25845; species=arabidopsis; confidence=weak |
| Arabidopsis | AT4G25845 (AT4G25845)oxysterol-binding 4B-like protein [Source:NCBI gene (formerly Entrezgene);Acc:3769784] identity=58.5; qcov=0.126; evalue=6.51e-09; confidence=weak |
| Rice | Os01g0166500 (P0028E10.1)- identity=50; qcov=0.172; evalue=4.59e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131004545 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057787241.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057787241.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057787241.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057787241.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057787241.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:64087335 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C43,C74,D8 |
Chr1:64087351 |
AC |
A |
1bp_deletion | frameshift_variant | 66 | A13,A15,A19,A5,A7,A9,B10,B101,B106,B110,B111,B115,B118,B119,B128,B129,B131,B134,B2,B20,B23,B27,B29,B34,B35,B38,B39,B42,B43,B45,B46,B47,B52,B60,B61,B67,B71,B72,B80,B86,B9,B90,B91,B92,B93,B94,B99,C12,C13,C16,C26,C30,C33,C4,C40,C44,C45,C56,C58,C60,C7,C72,C82,C87,D1,D3 |
Chr1:64087353 |
GAC |
G |
2bp_deletion | frameshift_variant | 66 | A13,A15,A19,A5,A7,A9,B10,B101,B106,B110,B111,B115,B118,B119,B128,B129,B131,B134,B2,B20,B23,B27,B29,B34,B35,B38,B39,B42,B43,B45,B46,B47,B52,B60,B61,B67,B71,B72,B80,B86,B9,B90,B91,B92,B93,B94,B99,C12,C13,C16,C26,C30,C33,C4,C40,C44,C45,C56,C58,C60,C7,C72,C82,C87,D1,D3 |
Chr1:64087715 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | C26,C33 |
Chr1:64087715 |
AT |
A |
1bp_deletion | CDS_variant | 2 | C26,C33 |
Chr1:64087948 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | B27,C47 |
Chr1:64087948 |
T |
TC |
1bp_insertion | CDS_variant | 2 | B27,C47 |
Chr1:64087954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,B17 |
Chr1:64088006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:64088021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,C17 |
Chr1:64088047 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:64088075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B17,D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。