Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004624`

染色体: Chr01 坐标: 64264351-64266280 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004624`
名称	SmilChr01G004624
描述	vestitone reductase-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	64264351 - 64266280 / `+`

ID 对照

NCBI Gene ID	`LOC131004827`
GeneID	`131004827`
locus_tag	`-`
NCBI Name	`LOC131004827`
原始查询	`LOC131004827`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vestitone reductase-like
产物	vestitone reductase-like
Arabidopsis	`AT2G45400` (BEN1) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819146] identity=48.2; qcov=1.05; evalue=9.8e-97; confidence=high
Rice	`Os08g0515900` - identity=41.8; qcov=0.869; evalue=1.04e-59; confidence=medium
GO	GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131004827

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057787565.1`
2	Cytoplasm	细胞质	1.00000	`XP_057787569.1`
3	Nucleus	细胞核	0.00000	`XP_057787565.1`
4	Chromosome	染色体	0.00000	`XP_057787565.1`
5	Centromere	着丝粒	0.00000	`XP_057787565.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:64264425`	`GGA`	`G`	2bp_deletion	frameshift_variant	1	B93
`Chr1:64264425`	`GGA`	`G`	2bp_deletion	CDS_variant	1	B93
`Chr1:64264444`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B6
`Chr1:64264444`	`TG`	`T`	1bp_deletion	CDS_variant	1	B6
`Chr1:64265787`	`GGC`	`G`	2bp_deletion	frameshift_variant	1	B92
`Chr1:64265787`	`GGC`	`G`	2bp_deletion	CDS_variant	1	B92
`Chr1:64266051`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B10,B128,B129

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787565.1

324 aa

162

324

NmrA

Epimerase

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_4

NAD_binding_10

PF05368 NmrA 5-134 aa PF01370 Epimerase 8-247 aa PF16363 GDP_Man_Dehyd 10-130 aa PF01073 3Beta_HSD 10-177 aa PF07993 NAD_binding_4 10-203 aa PF13460 NAD_binding_10 12-142 aa

XP_057787569.1

314 aa

157

314

NmrA

Epimerase

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_4

NAD_binding_10

PF05368 NmrA 5-134 aa PF01370 Epimerase 8-247 aa PF16363 GDP_Man_Dehyd 10-130 aa PF01073 3Beta_HSD 10-177 aa PF07993 NAD_binding_4 10-204 aa PF13460 NAD_binding_10 12-142 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787565.1`	Pfam	`PF05368`	NmrA	Family	5	134	1.9e-07	31.7	NmrA-like family
`XP_057787565.1`	Pfam	`PF01370`	Epimerase	Family	8	247	7.9e-19	68.7	NAD dependent epimerase/dehydratase family
`XP_057787565.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	130	2.2e-06	28.1	GDP-mannose 4,6 dehydratase
`XP_057787565.1`	Pfam	`PF01073`	3Beta_HSD	Family	10	177	3.5e-13	49.9	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057787565.1`	Pfam	`PF07993`	NAD_binding_4	Family	10	203	2.6e-08	34.1	Male sterility protein
`XP_057787565.1`	Pfam	`PF13460`	NAD_binding_10	Domain	12	142	8e-08	33.1	NAD(P)H-binding
`XP_057787569.1`	Pfam	`PF05368`	NmrA	Family	5	134	1.6e-07	31.9	NmrA-like family
`XP_057787569.1`	Pfam	`PF01370`	Epimerase	Family	8	247	7.1e-19	68.9	NAD dependent epimerase/dehydratase family
`XP_057787569.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	130	2e-06	28.2	GDP-mannose 4,6 dehydratase
`XP_057787569.1`	Pfam	`PF01073`	3Beta_HSD	Family	10	177	3.3e-13	50.0	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057787569.1`	Pfam	`PF07993`	NAD_binding_4	Family	10	204	2.4e-08	34.2	Male sterility protein
`XP_057787569.1`	Pfam	`PF13460`	NAD_binding_10	Domain	12	142	7.4e-08	33.2	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931582.1
TGAATACTTTGCTCCACTCAGTATAAATTAATGGAAGCACACACAGAGAGAGGGCAGGATGGAAGAGAGGAAGGGGAGAGTGTGTGTGACGGGTGGAAGCGGCTATGTGGCGTCGTGGCTTATAAAGAGGCTTCTTCAACATGGCTATTCCGTCAACGCTACTGTCAGGCCCCAACCTTCTGGCTTGAAGAAAGAGCTTAGCTTCCTAGAAAACCTAGATGGTGCACGCGACAGACTCCACATCTTCAACGCGGATTTTG...

XM_057931586.1
ACTCAGTATAAATTAATGGAAGCACACACAGAGAGAGGGCAGGATGGAAGAGAGGAAGGGGAGAGTGTGTGTGACGGGTGGAAGCGGCTATGTGGCGTCGTGGCTTATAAAGAGGCTTCTTCAACATGGCTATTCCGTCAACGCTACTGTCAGGCCCCAACCTTCTGGCTTGAAGAAAGAGCTTAGCTTCCTAGAAAACCTAGATGGTGCACGCGACAGACTCCACATCTTCAACGCGGATTTTGAAAATCCAGATAGTT...

CDS

2 records

下载 CDS FASTA

LOC131004827
ATGGAAGAGAGGAAGGGGAGAGTGTGTGTGACGGGTGGAAGCGGCTATGTGGCGTCGTGGCTTATAAAGAGGCTTCTTCAACATGGCTATTCCGTCAACGCTACTGTCAGGCCCCAACCTTCTGGCTTGAAGAAAGAGCTTAGCTTCCTAGAAAACCTAGATGGTGCACGCGACAGACTCCACATCTTCAACGCGGATTTTGAAAATCCAGATAGTTTTGGAGCTGCAATTGAAGGATGCGTAGGAGTTTTCCATGTTGC...

Protein

2 records

下载 Protein FASTA

XP_057787565.1
MEERKGRVCVTGGSGYVASWLIKRLLQHGYSVNATVRPQPSGLKKELSFLENLDGARDRLHIFNADFENPDSFGAAIEGCVGVFHVAHPIDFHSSETVESISQKCVEATLGILRACVKSKTVKRVVYTSSLSTVAVKEKLPDVLDEDEWSDIDFARNLNTTGASYFVSKTATERAALEFGGVEVVSVIPSWIHGPFVCPNLPGSVWSSLALFLGNEKQIKYGRITPMVHTDDVAMAHIHLFEHPQAQGRYLCSAVEVKYE...

XP_057787569.1
MEERKGRVCVTGGSGYVASWLIKRLLQHGYSVNATVRPQPSGLKKELSFLENLDGARDRLHIFNADFENPDSFGAAIEGCVGVFHVAHPIDFHSSETVESISQKCVEATLGILRACVKSKTVKRVVYTSSLSTVAVKEKLPDVLDEDEWSDIDFARNLNTTGASYFVSKTATERAALEFGGVEVVSVIPSWIHGPFVCPNLPGSVWSSLALFLGNEKQIKYGRITPMVHTDDVAMAHIHLFEHPQAQGRYLCSAVEVKYE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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