Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004628`

染色体: Chr01 坐标: 64329989-64332806 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004628`
名称	SmilChr01G004628
描述	xyloglucan endotransglucosylase protein 7-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	64329989 - 64332806 / `-`

ID 对照

NCBI Gene ID	`LOC131004882`
GeneID	`131004882`
locus_tag	`-`
NCBI Name	`LOC131004882`
原始查询	`LOC131004882`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	xyloglucan endotransglucosylase protein 7-like
产物	xyloglucan endotransglucosylase protein 7-like
Arabidopsis	`AT5G57560` (TCH4) Xyloglucan endotransglucosylase/hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835860] identity=56.8; qcov=0.793; evalue=8.58e-113; confidence=high
Rice	`Os06g0696600` (OsXTH12) - identity=54.2; qcov=0.787; evalue=1.53e-111; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005618 (cell wall); GO:0010411 (xyloglucan metabolic process); GO:0016762 (xyloglucan:xyloglucosyl transferase activity); GO:0042546 (cell wall biogenesis); GO:0048046 (apoplast)
KEGG	-
Pfam	PF00722 (Glyco_hydro_16); PF06955 (XET_C)
InterPro	-
eggNOG	-
NR	GeneID:131004882

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.40000	`XP_057787621.1`
2	Vacuole	液泡	0.40000	`XP_057787621.1`
3	Cell wall	细胞壁	0.20000	`XP_057787621.1`
4	Nucleus	细胞核	0.00000	`XP_057787621.1`
5	Chromosome	染色体	0.00000	`XP_057787621.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:64330332`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B22,C11,C42,C45,C87
`Chr1:64330333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr1:64330336`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr1:64330368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:64330373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B4,C67,D10
`Chr1:64330374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B12,B47,B51,C22,C6
`Chr1:64330375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:64330376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:64330391`	`GA`	`G`	1bp_deletion	frameshift_variant	108	A11,A14,A16,A19,A21,A5,A6,B1,B10,B102,B103,B105,B107,B108,B109,B114,B117,B119,B120,B121,B122,B123,B127,B13,B131,B133,B18,B19,B2,B20,B22,B27,B3,B30,B31,B34,B38,B40,B49,B5,B52,B54,B56,B58,B59,B6,B63,B64,B65,B66,B68,B69,B70,B72,B73,B76,B8,B82,B83,B84,B86,B88,B90,B91,B92,B95,B96,B97,C11,C13,C16,C17,C26,C27,C29,C32,C33,C35,C40,C42,C44,C45,C47,C48,C49,C51,C53,C54,C55,C57,C59,C60,C64,C65,C66,C68,C69,C78,C82,C83,C86,C87,C9,D1,D3,D4,D6,D7
`Chr1:64330418`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,B55
`Chr1:64330428`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	A23,B60,D11
`Chr1:64330428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,B60,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787621.1

333 aa

166

333

Glyco_hydro_16

XET_C

PF00722 Glyco_hydro_16 74-253 aa PF06955 XET_C 293-330 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787621.1`	Pfam	`PF00722`	Glyco_hydro_16	Domain	74	253	1.4e-59	201.2	Glycosyl hydrolases family 16
`XP_057787621.1`	Pfam	`PF06955`	XET_C	Family	293	330	3.1e-17	62.8	Xyloglucan endo-transglycosylase (XET) C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057931638.1
ACATTGAAAGAGACCACTAATAATGAGGATCATTTTGAAGGTGAGTGTACAAAAGAAGCCATGTTCATTCACTAAATAACACAATGCATTTCATTTTCATTTCTCTCACTACTTCTTCTTCTTCTTCATCATGTCTTCCAAGAGAGTCACTACTCTCATGCTTCCCAGAAATTTTCATTTCCACCCCTCTCGTTCCCACAAACTCCTCCCCTATTTCGGACTTATACTCTTCTGCATCTTCATTTTCAAGGTGGACATCA...

CDS

1 records

下载 CDS FASTA

LOC131004882
ATGTCTTCCAAGAGAGTCACTACTCTCATGCTTCCCAGAAATTTTCATTTCCACCCCTCTCGTTCCCACAAACTCCTCCCCTATTTCGGACTTATACTCTTCTGCATCTTCATTTTCAAGGTGGACATCATCATATCTCAATCAGCCTCTGCGTCTCGACGTAATCTAGATGCAACAAGAAGGCACGTGCACACTTTGATGATCGGAAATGGCACGTTCCACCGGAACTTCATCGTGTCGTGGGGCGAAGGGCACGTCCG...

Protein

1 records

下载 Protein FASTA

XP_057787621.1
MSSKRVTTLMLPRNFHFHPSRSHKLLPYFGLILFCIFIFKVDIIISQSASASRRNLDATRRHVHTLMIGNGTFHRNFIVSWGEGHVRVVDEGEELVLMLDKKYGAAVESKKEYLFARIDMQIKLLPRNSAGTVATYYLLSDGEQHDKIDLEFLGNSSGDPYTLHTNIYIKGKGEREQQFFLWFDPAQDFHTYSILWNPKCIIFYVDGLPIREFKNAEHLGVPFPKDQGMRLYSSFWNADDWATQGGRVKTDWTAAPFTVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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