Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004680`

染色体: Chr01 坐标: 64882647-64883991 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004680`
名称	SmilChr01G004680
描述	S-adenosylmethionine decarboxylase proenzyme-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	64882647 - 64883991 / `-`

ID 对照

NCBI Gene ID	`LOC131005030`
GeneID	`131005030`
locus_tag	`-`
NCBI Name	`LOC131005030`
原始查询	`LOC131005030`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosylmethionine decarboxylase proenzyme-like
产物	S-adenosylmethionine decarboxylase proenzyme-like
Arabidopsis	`AT3G02470` (SAMDC) S-adenosylmethionine decarboxylase [Source:NCBI gene (formerly Entrezgene);Acc:821214] identity=46.5; qcov=1.08; evalue=4.23e-87; confidence=high
Rice	`Os04g0498600` (SAMDC) - identity=51.8; qcov=1.04; evalue=1.6e-103; confidence=high
GO	GO:0004014 (adenosylmethionine decarboxylase activity); GO:0005829 (cytosol); GO:0006597 (spermine biosynthetic process); GO:0008295 (spermidine biosynthetic process)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01536 (SAM_decarbox)
InterPro	-
eggNOG	-
NR	GeneID:131005030

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057787806.1`
2	Cytoplasm	细胞质	0.80000	`XP_057787806.1`
3	Nucleus	细胞核	0.40000	`XP_057787806.1`
4	Chromosome	染色体	0.00000	`XP_057787806.1`
5	Centromere	着丝粒	0.00000	`XP_057787806.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:64882689`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C77
`Chr1:64882706`	`TAA`	`T`	2bp_deletion	frameshift_variant	1	B53
`Chr1:64882706`	`TAA`	`T`	2bp_deletion	CDS_variant	1	B53
`Chr1:64882760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:64882860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:64882890`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:64882894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B123,B66,C1
`Chr1:64882915`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr1:64882940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr1:64882992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:64883100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B98,D10
`Chr1:64883148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787806.1

320 aa

160

320

SAM_decarbox

PF01536 SAM_decarbox 6-264 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787806.1`	Pfam	`PF01536`	SAM_decarbox	Family	6	264	5.8e-78	263.1	Adenosylmethionine decarboxylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057931823.1
CATTGATGTTTTAATGGAGACTAAAGGCGGCAAGAAGAAATCATCCAGTAGCATTAGTAGAATACATTACGAAGCTCCCCTGGGTTACATCATCGAAGACGTTCGTCCCAACGGTGGCATCCAGAAATTCCGCTCTGCTGCTTACTCCAACTGCGTGAGGAAGCCATCCTGATATGAACGTGGAGAGTAGGAAATTTCACCATAAAGAATTTTCAAAATTTTCCCCTAAAACTGTCCAAATTGTTGTAATTAAGAAGAAA...

CDS

1 records

下载 CDS FASTA

LOC131005030
ATGAGTGCAGCTATCGGTTTCGAGGGCTTGGAGAAGAGGCTGGAGATTACATTCTCATCAGAGTTGGGATATGCGAAGGGGGCCCTGACGCGGGCGCAGGTGGACTCCATCCGCCCGCTGCAGCTCTCCAACACCGAGTTGGACTCGTACGTTTTGTCGGAGTCGAGTCTGTTTGTTTACCCACTCAAAATTGTTATCAAAACGTGTGGGACCACCAGGCTTTTGATGTCTATCCCGCAGATACTGAAACTCGCCGACTC...

Protein

1 records

下载 Protein FASTA

XP_057787806.1
MSAAIGFEGLEKRLEITFSSELGYAKGALTRAQVDSIRPLQLSNTELDSYVLSESSLFVYPLKIVIKTCGTTRLLMSIPQILKLADSLSLAPSSVRYTRGTFIFQNSQPAPHRSFAEEVAFLNSFFSSGSAYVLGDPHRKWHVYVAVMVMDXNLEMCMTGLDRDKAAVFFKGGGKMTKLSRIDEIVGSHAICDYEFEPXMNGIEGAAYSTVHVTPEDGFSYASYEAMGLDLDSVGXKRVLRCFNPREFSVAVTCGGXFGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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