当前解析结果
SmilChr01G001267| 统一新 Gene ID | SmilChr01G001267 |
|---|---|
| 名称 | SmilChr01G001267 |
| 描述 | uncharacterized SmilChr01G001267 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 25352681 - 25353779 / - |
| NCBI Gene ID | LOC131005074 |
|---|---|
| GeneID | 131005074 |
| locus_tag | - |
| NCBI Name | LOC131005074 |
| 原始查询 | LOC131005074 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | folic acid binding / transferase [Source:NCBI gene (formerly Entrezgene);Acc:816615]; symbol=AT2G20830; hit=AT2G20830; species=arabidopsis; confidence=high |
| 产物 | folic acid binding / transferase [Source:NCBI gene (formerly Entrezgene);Acc:816615]; symbol=AT2G20830; hit=AT2G20830; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G20830 (AT2G20830)folic acid binding / transferase [Source:NCBI gene (formerly Entrezgene);Acc:816615] identity=54.4; qcov=0.608; evalue=1.19e-54; confidence=high |
| Rice | Os03g0582000 (OJ1785_A05.10)- identity=43.1; qcov=0.642; evalue=6.09e-46; confidence=medium |
| GO | GO:0005542 (folic acid binding); GO:0016740 (transferase activity) |
| KEGG | - |
| Pfam | PF07837 (FTCD_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005074 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057787864.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057787864.1 |
| 3 | Chloroplast | 叶绿体 | 0.40000 | XP_057787864.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057787864.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057787864.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:25352688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr1:25352695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,B2 |
Chr1:25352722 |
GA |
G |
1bp_deletion | frameshift_variant | 5 | B11,B138,B2,C1,C73 |
Chr1:25352722 |
GA |
G |
1bp_deletion | CDS_variant | 5 | B11,B138,B2,C1,C73 |
Chr1:25352724 |
C |
CCG |
2bp_insertion | frameshift_variant | 10 | B129,B73,B84,B87,C12,C5,C59,C74,C81,C86 |
Chr1:25352780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,C64 |
Chr1:25352813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr1:25352864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:25352903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr1:25352937 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:25352941 |
G |
A |
EMS_canonical_SNV | stop_gained | 56 | A5,A7,A8,B10,B105,B106,B109,B127,B13,B130,B17,B19,B2,B24,B31,B35,B58,B67,B69,B72,B74,B79,B80,B81,B82,B85,B89,B91,B95,B99,C14,C17,C19,C20,C26,C28,C29,C36,C4,C41,C42,C46,C48,C51,C52,C57,C64,C66,C73,C75,C82,C83,C87,D2,D4,D6 |
Chr1:25353007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057787864.1PF07837
FTCD_N 63-139 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787864.1 |
Pfam | PF07837 |
FTCD_N | Domain | 63 | 139 | 5.1e-09 | 36.8 | Formiminotransferase domain, N-terminal subdomain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。