Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004759`

染色体: Chr01 坐标: 65785348-65788941 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004759`
名称	SmilChr01G004759
描述	probable serine/threonine-protein kinase WNK3
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	65785348 - 65788941 / `-`

ID 对照

NCBI Gene ID	`LOC131005103`
GeneID	`131005103`
locus_tag	`-`
NCBI Name	`LOC131005103`
原始查询	`LOC131005103`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable serine/threonine-protein kinase WNK3
产物	probable serine/threonine-protein kinase WNK3
Arabidopsis	`AT3G48260` (WNK3) with no lysine (K) kinase 3 [Source:NCBI gene (formerly Entrezgene);Acc:823984] identity=63.3; qcov=0.787; evalue=0; confidence=high
Rice	`Os05g0108300` (OsWNK2) - identity=51.3; qcov=1.04; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12202 (OSR1_C)
InterPro	-
eggNOG	-
NR	GeneID:131005103

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057787897.1`
2	Cytoplasm	细胞质	0.60000	`XP_057787897.1`
3	Nucleus	细胞核	0.20000	`XP_057787897.1`
4	Cell membrane	细胞膜	0.20000	`XP_057787897.1`
5	Chromosome	染色体	0.00000	`XP_057787897.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:65785700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B23,C61,C78
`Chr1:65785726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr1:65785729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:65785744`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B139
`Chr1:65785744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr1:65785839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B32,B87,C36,C59
`Chr1:65785941`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:65786303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B74,C37
`Chr1:65787475`	`CT`	`C`	1bp_deletion	frameshift_variant	2	B5,B64
`Chr1:65787475`	`CT`	`C`	1bp_deletion	CDS_variant	2	B5,B64
`Chr1:65787733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B124,B23,C61,C78
`Chr1:65788233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787897.1

629 aa

314

629

PK_Tyr_Ser-Thr

Pkinase

OSR1_C

PF07714 PK_Tyr_Ser-Thr 33-279 aa PF00069 Pkinase 33-288 aa PF12202 OSR1_C 344-395 aa

XP_057787898.1

620 aa

310

620

PK_Tyr_Ser-Thr

Pkinase

OSR1_C

PF07714 PK_Tyr_Ser-Thr 22-270 aa PF00069 Pkinase 23-279 aa PF12202 OSR1_C 335-386 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787897.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	33	279	1.3e-36	127.0	Protein tyrosine and serine/threonine kinase
`XP_057787897.1`	Pfam	`PF00069`	Pkinase	Domain	33	288	1.5e-51	176.1	Protein kinase domain
`XP_057787897.1`	Pfam	`PF12202`	OSR1_C	Domain	344	395	7.9e-06	26.6	Oxidative-stress-responsive kinase 1 C-terminal domain
`XP_057787898.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	22	270	6.5e-37	128.0	Protein tyrosine and serine/threonine kinase
`XP_057787898.1`	Pfam	`PF00069`	Pkinase	Domain	23	279	9.9e-52	176.6	Protein kinase domain
`XP_057787898.1`	Pfam	`PF12202`	OSR1_C	Domain	335	386	7.7e-06	26.6	Oxidative-stress-responsive kinase 1 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931915.1
TAGAGATGTAGGCAGATCATATACATAACCGACGTAGACTCGTCTATATCAAACAAAAACCAGTTTACGTCATCTAATTCGAATTCTTCAAATTTGTTATGTTCAAAGATTTTCGAATTATCACTGTTTCATTTCTCAAAGCCGCGAAACTGTGTAGTATTCGAATTATAAAATACAATTTCTGCCATCGAATTGCGGCAGAAGACAGTATAATATTCCAATAATTTTCAGTAGTAGATCTGAATCAGAGTAGGTTTTCT...

XM_057931914.1
AGAGATGTAGGCAGATCATATACATAACCGACGTAGACTCGTCTATATCAAACAAAAACCAGTTTACGTCATCTAATTCGAATTCTTCAAATTTGTTATGTTCAAAGATTTTCGAATTATCACTGTTTCATTTCTCAAAGCCGCGAAACTGTGTAGTATTCGAATTATAAAATACAATTTCTGCCATCGAATTGCGGCAGAAGACAGTATAATATTCCAATAATTTTCAGTAGTAGATCTGAATCAGAGTAGGTTTTCTG...

CDS

2 records

下载 CDS FASTA

LOC131005103
ATGGTGCAGGACTCGGCGTCCGAGACCGAACCGGACGATTACGATATTGTGCCCGAATTCGTCGAGTACAAAGAAGTGCTTGGAAAAGGGGCTTTCAAAAAAGTATATAGGGCTTTTGATGAGTTGGAAGGCATAGAGGTGGCTTGGAATCAGGTGAAACTTGCTGATCTATTGAGAAATTCCGATGATATGGAGAGGTTGTGTTCTGAAGTTCACCTGCTGAAAACTCTCAAGCACAAGAACATTATCAAATTTTACAA...

LOC131005103
ATGGTGCAGGACTCGGCGTCCGAGACCGAACCGGACGATTACGATATTGTGCCCGAATTCGTCGAGGTGGATCCCTCCGGTCGCTACGGTCGATACAAAGAAGTGCTTGGAAAAGGGGCTTTCAAAAAAGTATATAGGGCTTTTGATGAGTTGGAAGGCATAGAGGTGGCTTGGAATCAGGTGAAACTTGCTGATCTATTGAGAAATTCCGATGATATGGAGAGGTTGTGTTCTGAAGTTCACCTGCTGAAAACTCTCAA...

Protein

2 records

下载 Protein FASTA

XP_057787897.1
MVQDSASETEPDDYDIVPEFVEVDPSGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKLADLLRNSDDMERLCSEVHLLKTLKHKNIIKFYNSWIDTKNEHINFITEIFVSGTLRQYRKKHKHVDVRALKKWSRQILEGLSYLHRHDPPVIHRDLKCDNVFVNGNQGEVKIGDLGLAAILQKASSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECSNAAQIYKKVTAGIKPASLRKVKDP...

XP_057787898.1
MVQDSASETEPDDYDIVPEFVEYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKLADLLRNSDDMERLCSEVHLLKTLKHKNIIKFYNSWIDTKNEHINFITEIFVSGTLRQYRKKHKHVDVRALKKWSRQILEGLSYLHRHDPPVIHRDLKCDNVFVNGNQGEVKIGDLGLAAILQKASSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECSNAAQIYKKVTAGIKPASLRKVKDPDIREFIEKC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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