当前解析结果
SmilChr01G004761| 统一新 Gene ID | SmilChr01G004761 |
|---|---|
| 名称 | SmilChr01G004761 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 65793573 - 65796299 / + |
| NCBI Gene ID | LOC131005104 |
|---|---|
| GeneID | 131005104 |
| locus_tag | - |
| NCBI Name | LOC131005104 |
| 原始查询 | LOC131005104 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=27.5; qcov=0.949; evalue=1.08e-54; confidence=low |
| Rice | Os07g0186500- identity=28.8; qcov=0.865; evalue=3.07e-55; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005104 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057787899.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057787899.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057787899.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057787899.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057787899.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:65794311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:65794330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,C8 |
Chr1:65794622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:65794658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,C27,C52,C77 |
Chr1:65794676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:65795001 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B104 |
Chr1:65795001 |
G |
GA |
1bp_insertion | CDS_variant | 1 | B104 |
Chr1:65795022 |
CAT |
C |
2bp_deletion | frameshift_variant | 75 | A1,A18,A22,A3,A4,A6,A8,B106,B111,B118,B125,B128,B13,B137,B14,B15,B25,B26,B3,B30,B31,B34,B37,B38,B39,B44,B48,B49,B50,B51,B53,B55,B57,B58,B65,B7,B70,B73,B75,B77,B79,B81,B87,B89,B9,B97,B98,C12,C23,C25,C28,C29,C31,C35,C38,C39,C4,C40,C41,C42,C47,C5,C54,C61,C64,C66,C71,C74,C76,C79,C83,C84,C86,C87,D5 |
Chr1:65795130 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B109,C8 |
Chr1:65795130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B109,C8 |
Chr1:65795243 |
TTA |
T |
2bp_deletion | frameshift_variant | 100 | A11,A13,A14,A2,A21,A25,A5,A6,A7,A9,B100,B103,B105,B107,B11,B112,B113,B114,B115,B117,B118,B12,B120,B121,B123,B126,B128,B13,B134,B135,B138,B140,B16,B17,B18,B19,B21,B22,B24,B28,B3,B30,B33,B35,B4,B41,B48,B5,B54,B56,B59,B61,B64,B67,B69,B71,B74,B76,B84,B85,B86,B88,B95,B96,C1,C10,C11,C15,C18,C19,C21,C24,C25,C27,C3,C30,C34,C37,C43,C45,C51,C52,C55,C58,C62,C67,C69,C7,C72,C73,C75,C77,C78,C80,C81,C82,C87,D2,D4,D8 |
Chr1:65795588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787899.1PF00931
NB-ARC 110-282 aa
PF23559
WHD_DRP 364-439 aa
PF23598
LRR_14 514-779 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787899.1 |
Pfam | PF00931 |
NB-ARC | Domain | 110 | 282 | 6e-37 | 127.6 | NB-ARC domain |
XP_057787899.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 364 | 439 | 2.5e-07 | 31.4 | Disease resistance protein Winged helix domain |
XP_057787899.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 514 | 779 | 9.3e-14 | 51.6 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。