当前解析结果
SmilChr01G004766| 统一新 Gene ID | SmilChr01G004766 |
|---|---|
| 名称 | SmilChr01G004766 |
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 65849300 - 65853694 / - |
| NCBI Gene ID | LOC131005107 |
|---|---|
| GeneID | 131005107 |
| locus_tag | - |
| NCBI Name | LOC131005107 |
| 原始查询 | LOC131005107 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 产物 | putative late blight resistance protein homolog R1C-3 |
| Arabidopsis | AT1G59124 (AT1G58807)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842232] identity=27.9; qcov=0.502; evalue=7.44e-43; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=26.1; qcov=0.645; evalue=1.5e-45; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005107 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057787902.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057787902.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057787902.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057787902.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057787902.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:65849611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr1:65850025 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | A11 |
Chr1:65850025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr1:65850088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B62,D9 |
Chr1:65850146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A8,B117,C57,D10 |
Chr1:65850176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B44,B91,C51 |
Chr1:65850208 |
GT |
G |
1bp_deletion | frameshift_variant | 11 | A21,A22,B20,B78,B83,B84,B95,B99,C58,C62,C72 |
Chr1:65850213 |
T |
TG |
1bp_insertion | frameshift_variant | 9 | A21,A22,B20,B78,B83,B84,C58,C62,C72 |
Chr1:65850221 |
AG |
A |
1bp_deletion | frameshift_variant | 11 | A21,A22,B20,B78,B83,B84,C29,C62,C69,C72,D1 |
Chr1:65850226 |
C |
CA |
1bp_insertion | frameshift_variant | 9 | A21,A22,B20,B78,B83,B84,C58,C62,C72 |
Chr1:65850236 |
A |
ACC |
2bp_insertion | frameshift_variant | 9 | A21,A22,B20,B78,B83,B84,C58,C62,C72 |
Chr1:65850241 |
A |
AAT |
2bp_insertion | frameshift_variant | 9 | A21,A22,B20,B78,B83,B84,C58,C62,C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787902.1PF00931
NB-ARC 142-277 aa
PF00931
NB-ARC 420-570 aa
PF23598
LRR_14 781-1011 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787902.1 |
Pfam | PF00931 |
NB-ARC | Domain | 142 | 277 | 1.5e-51 | 175.2 | NB-ARC domain |
XP_057787902.1 |
Pfam | PF00931 |
NB-ARC | Domain | 420 | 570 | 1.5e-51 | 175.2 | NB-ARC domain |
XP_057787902.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 781 | 1011 | 1.7e-13 | 50.8 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。