当前解析结果
SmilChr01G001296| 统一新 Gene ID | SmilChr01G001296 |
|---|---|
| 名称 | SmilChr01G001296 |
| 描述 | uncharacterized SmilChr01G001296 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 25825694 - 25826320 / - |
| NCBI Gene ID | LOC131005166 |
|---|---|
| GeneID | 131005166 |
| locus_tag | - |
| NCBI Name | LOC131005166 |
| 原始查询 | LOC131005166 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=29.5; qcov=0.798; evalue=4.86e-22; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005166 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.60000 | XP_057787970.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057787970.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057787970.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057787970.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057787970.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:25825701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B80,B98 |
Chr1:25825713 |
G |
GT |
1bp_insertion | frameshift_variant | 14 | A2,B103,B111,B59,B6,B63,B66,B70,B78,C4,C52,C64,C66,D3 |
Chr1:25825714 |
TC |
T |
1bp_deletion | frameshift_variant | 5 | B50,C52,C8,C81,D4 |
Chr1:25825714 |
TC |
T |
1bp_deletion | CDS_variant | 5 | B50,C52,C8,C81,D4 |
Chr1:25825715 |
C |
CT |
1bp_insertion | frameshift_variant | 49 | A21,A24,A3,A4,A9,B10,B105,B107,B121,B122,B13,B16,B3,B34,B40,B41,B46,B47,B5,B52,B54,B62,B64,B65,B68,B75,B8,B84,B86,B94,B97,C10,C11,C16,C2,C21,C30,C35,C38,C39,C45,C61,C65,C67,C79,C82,C83,C87,D9 |
Chr1:25825723 |
TC |
T |
1bp_deletion | frameshift_variant | 9 | A21,B110,B13,B34,B52,B75,B79,C13,C83 |
Chr1:25825725 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B109,B98,C82 |
Chr1:25825757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B109,B3,C4,C82 |
Chr1:25825777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B69,B9 |
Chr1:25825792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr1:25825802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C25,C30 |
Chr1:25825815 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B16,B71 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。