当前解析结果
SmilChr01G004840| 统一新 Gene ID | SmilChr01G004840 |
|---|---|
| 名称 | SmilChr01G004840 |
| 描述 | 1,8-cineole synthase, chloroplastic-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 66534735 - 66537276 / + |
| NCBI Gene ID | LOC131005179 |
|---|---|
| GeneID | 131005179 |
| locus_tag | - |
| NCBI Name | LOC131005179 |
| 原始查询 | LOC131005179 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 1,8-cineole synthase, chloroplastic-like |
| 产物 | 1%2C8-cineole synthase%2C chloroplastic-like |
| Arabidopsis | AT2G24210 (TPS10)terpene synthase 10 [Source:NCBI gene (formerly Entrezgene);Acc:816955] identity=44.4; qcov=0.968; evalue=2.3e-149; confidence=medium |
| Rice | Os08g0168000 (OsTPS31)- identity=29.3; qcov=0.938; evalue=2.08e-74; confidence=low |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | - |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005179 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.80000 | XP_057787996.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057787996.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057787996.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057787996.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057787996.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:66535181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,C59 |
Chr1:66535188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr1:66535341 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr1:66535492 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B113,B125,B90,B92,C85 |
Chr1:66535898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B127,B98,C50 |
Chr1:66535912 |
A |
ACC |
2bp_insertion | frameshift_variant | 1 | B92 |
Chr1:66535912 |
A |
ACC |
2bp_insertion | CDS_variant | 1 | B92 |
Chr1:66536001 |
GA |
G |
1bp_deletion | frameshift_variant | 8 | A22,B115,B20,B53,B86,B9,C37,C44 |
Chr1:66536003 |
TA |
T |
1bp_deletion | frameshift_variant | 8 | A22,B115,B20,B53,B86,B9,C37,C44 |
Chr1:66536008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,B89,C34,C87 |
Chr1:66536257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B97 |
Chr1:66536302 |
AC |
A |
1bp_deletion | frameshift_variant | 8 | A2,B3,B48,B76,C53,C58,C80,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787996.1PF01397
Terpene_synth 54-206 aa
PF03936
Terpene_synth_C 272-509 aa
PF19086
Terpene_syn_C_2 310-508 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787996.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 54 | 206 | 1.8e-38 | 132.9 | Terpene synthase, N-terminal domain |
XP_057787996.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 272 | 509 | 2e-89 | 299.7 | Terpene synthase family, metal binding domain |
XP_057787996.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 310 | 508 | 1.2e-58 | 198.9 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。