当前解析结果
SmilChr01G004846| 统一新 Gene ID | SmilChr01G004846 |
|---|---|
| 名称 | SmilChr01G004846 |
| 描述 | uncharacterized SmilChr01G004846 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 66607302 - 66612035 / + |
| NCBI Gene ID | LOC131005183 |
|---|---|
| GeneID | 131005183 |
| locus_tag | - |
| NCBI Name | LOC131005183 |
| 原始查询 | LOC131005183 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:814969]; symbol=AT2G04305; hit=AT2G04305; species=arabidopsis; confidence=high |
| 产物 | Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:814969]; symbol=AT2G04305; hit=AT2G04305; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G04305 (AT2G04305)Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:814969] identity=76.5; qcov=0.94; evalue=0; confidence=high |
| Rice | Os08g0130000 (OsSTA203)- identity=56.8; qcov=0.967; evalue=3.55e-152; confidence=high |
| GO | GO:0016020 (membrane); GO:0030001 (metal ion transport); GO:0046873 (metal ion transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF01544 (CorA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005183 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057788000.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057788000.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057788000.1 |
| 4 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057788000.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057788000.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:66608117 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:66608289 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B86,B9,C44 |
Chr1:66608568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr1:66608617 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:66608742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr1:66608817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B66 |
Chr1:66610589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr1:66610608 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B128 |
Chr1:66610608 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr1:66611257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr1:66611424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:66611462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B86,B9,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788000.1PF01544
CorA 133-405 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788000.1 |
Pfam | PF01544 |
CorA | Family | 133 | 405 | 1.2e-28 | 101.0 | CorA-like Mg2+ transporter protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。