Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004877`

染色体: Chr01 坐标: 66871493-66876814 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004877`
名称	SmilChr01G004877
描述	proline iminopeptidase
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	66871493 - 66876814 / `+`

ID 对照

NCBI Gene ID	`LOC131005216`
GeneID	`131005216`
locus_tag	`-`
NCBI Name	`LOC131005216`
原始查询	`LOC131005216`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	proline iminopeptidase
产物	proline iminopeptidase
Arabidopsis	`AT2G14260` (PIP) proline iminopeptidase [Source:NCBI gene (formerly Entrezgene);Acc:815913] identity=78.3; qcov=0.991; evalue=0; confidence=high
Rice	`Os05g0513900` - identity=77; qcov=0.734; evalue=5.07e-146; confidence=high
GO	GO:0004177 (aminopeptidase activity); GO:0005737 (cytoplasm); GO:0006508 (proteolysis)
KEGG	smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131005216

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057788037.1`
2	Cytoplasm	细胞质	1.00000	`XP_057788038.1`
3	Peroxisome	过氧化物酶体	0.80000	`XP_057788037.1`
4	Nucleus	细胞核	0.20000	`XP_057788038.1`
5	Chromosome	染色体	0.00000	`XP_057788038.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:66871738`	`C`	`CTT`	2bp_insertion	frameshift_variant	33	A11,A14,A20,A23,A8,B10,B11,B112,B117,B119,B120,B124,B127,B2,B31,B45,B51,B52,B59,B6,B62,B91,C1,C18,C3,C33,C4,C57,C7,C72,D1,D3,D9
`Chr1:66871750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr1:66872348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,B33,C22,C29
`Chr1:66873411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr1:66873693`	`AGC`	`A`	2bp_deletion	frameshift_variant	4	B53,C60,C82,D5
`Chr1:66874927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B90,B92
`Chr1:66875482`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr1:66875979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B27,B72,C26,C47
`Chr1:66876543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788037.1

389 aa

194

389

Abhydrolase_1

Abhydrolase_6

Hydrolase_4

PF00561 Abhydrolase_1 104-366 aa PF12697 Abhydrolase_6 105-366 aa PF12146 Hydrolase_4 129-215 aa

XP_057788038.1

331 aa

166

331

Abhydrolase_1

Abhydrolase_6

Hydrolase_4

PF00561 Abhydrolase_1 46-308 aa PF12697 Abhydrolase_6 47-308 aa PF12146 Hydrolase_4 71-158 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788037.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	104	366	8.2e-30	105.0	alpha/beta hydrolase fold
`XP_057788037.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	105	366	6.3e-09	37.5	Alpha/beta hydrolase family
`XP_057788037.1`	Pfam	`PF12146`	Hydrolase_4	Domain	129	215	2.4e-08	34.3	Serine aminopeptidase, S33
`XP_057788038.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	46	308	4.9e-30	105.7	alpha/beta hydrolase fold
`XP_057788038.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	47	308	3.9e-09	38.2	Alpha/beta hydrolase family
`XP_057788038.1`	Pfam	`PF12146`	Hydrolase_4	Domain	71	158	1.5e-08	35.0	Serine aminopeptidase, S33

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932054.1
ATAATTCGATTATTGAATTATCCAATCCCAGTATCCATTTAGACATCCCCTACTAAAAATACACTTTCGTATGACTCAAACAAACAAACAAAAACGAGAGTATTTTGAAAGGAATCATTAATTGCTGATGCGTTCTGTAGTATACAAGATAATGGCTAATCCGCATCCGCATAATTGAATTTGATCGGAATCGGCAATGAATCTTGGGGTTGCCGTTATACCTCCCAACACTCCTCTTCGTCTCTCTTTCACTCATACTC...

XM_057932055.1
TAGTATACAAGATAATGGCTAATCCGCATCCGCATAATTGAATTTGATCGGAATCGGCAATGAATCTTGGGGTTGCCGTTATACCTCCCAACACTCCTCTTCGTCTCTCTTTCACTCATACTCTAGCTCCCATCAATAATCCCACAACTCCAGGGTGTGTGCAGGAAGAAGAAATCTAGTTGTGCTCAGTCAAAGTCGTAATCTTGGTTATTATAACAGTGATCGGCTAGTAATTTCGGACACTATGGAAACCAAAGCAG...

CDS

2 records

下载 CDS FASTA

LOC131005216
ATGAATCTTGGGGTTGCCGTTATACCTCCCAACACTCCTCTTCGTCTCTCTTTCACTCATACTCTAGCTCCCATCAATAATCCCACAACTCCAGGAAGAAGAAATCTAGTTGTGCTCAGTCAAAGTCGTAATCTTGGTTATTATAACAGTGATCGGCTAGTAATTTCGGACACTATGGAAACCAAAGCAGTGTCTTCTGAAGTAAATAGGAGCCTTTACACGGATATAGAGCCATACGACACTGGTTTTCTAAAGGTTTC...

LOC131005216
ATGGAAACCAAAGCAGTGTCTTCTGAAGTAAATAGGAGCCTTTACACGGATATAGAGCCATACGACACTGGTTTTCTAAAGGTTTCGGACATTCACACACTTTATTATGAGCAGTCTGGGAATCCGGATGGGCATCCAGTGGTTTTCCTCCATGGAGGTCCAGGGGGCGGAACTTCATCTAAGAACCGGAAATTCTTTGATCCCCATTTTTATAGGATCATTTTATTTGATCAGAGAGGCGCTGGTAAAAGTGCACCTCA...

Protein

2 records

下载 Protein FASTA

XP_057788037.1
MNLGVAVIPPNTPLRLSFTHTLAPINNPTTPGRRNLVVLSQSRNLGYYNSDRLVISDTMETKAVSSEVNRSLYTDIEPYDTGFLKVSDIHTLYYEQSGNPDGHPVVFLHGGPGGGTSSKNRKFFDPHFYRIILFDQRGAGKSAPHACLEENTTWKLIEDIEKLRTHLQVPEWLVFGGSWGSTLSLAYSESHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWEPFRDLIPESERGCFVDAYHKRLNSNDKETQYA...

XP_057788038.1
METKAVSSEVNRSLYTDIEPYDTGFLKVSDIHTLYYEQSGNPDGHPVVFLHGGPGGGTSSKNRKFFDPHFYRIILFDQRGAGKSAPHACLEENTTWKLIEDIEKLRTHLQVPEWLVFGGSWGSTLSLAYSESHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWEPFRDLIPESERGCFVDAYHKRLNSNDKETQYAAARAWTKWEMMTAHLLPNEATAKRGDDDEFCLAFARIENHYFVNRGFFPSDSYLLDNL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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