Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004889

染色体: Chr01 坐标: 66941825-66945978 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004889
名称SmilChr01G004889
描述uncharacterized SmilChr01G004889
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向66941825 - 66945978 / +

ID 对照

NCBI Gene IDLOC131005230
GeneID131005230
locus_tag-
NCBI NameLOC131005230
原始查询LOC131005230

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:816810]; symbol=AT2G22795; hit=AT2G22795; species=arabidopsis; confidence=weak
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:816810]; symbol=AT2G22795; hit=AT2G22795; species=arabidopsis; confidence=weak
ArabidopsisAT2G22795 (AT2G22795)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:816810]
identity=54; qcov=0.154; evalue=1.84e-22; confidence=weak
RiceOs03g0726400 (OSJNBb0122C16.13)
-
identity=33.8; qcov=0.437; evalue=1.06e-15; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131005230

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 0.60000 XP_057788054.1
2 Cell membrane 细胞膜 0.40000 XP_057788054.1
3 Endoplasmic reticulum 内质网 0.40000 XP_057788054.1
4 Nucleus 细胞核 0.00000 XP_057788054.1
5 Chromosome 染色体 0.00000 XP_057788054.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:66944386 G A EMS_canonical_SNV CDS_variant 1 B50
Chr1:66944431 G A EMS_canonical_SNV CDS_variant 2 B13,B139
Chr1:66944445 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:66944583 C T EMS_canonical_SNV CDS_variant 2 B12,B55
Chr1:66945257 G A EMS_canonical_SNV CDS_variant 2 B62,D9
Chr1:66945406 G A EMS_canonical_SNV CDS_variant 4 B104,B13,B50,C48
Chr1:66945425 C T EMS_canonical_SNV CDS_variant 4 B20,B28,B40,C87
Chr1:66945585 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:66945587 C T EMS_canonical_SNV CDS_variant 1 B55

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057932071.1
TTTAAAGTCGTACACATCTGTTTCGAAGAAAGAAGTCCTACATGTCTATATTGATAATGGATATAAAACGCATCCTTTTTTTGTTTTGAGTGGTCGATAAAAAATGTGGTCTCATAGAAGCGACTCATAGCGAAATTGTAAACTACTGTGTGGAAGAAACCGAAGATGACCCGGTCATTATATATGGGTGAACCCGAAAACCGGAACTAAGCTAATTCAATCAGGAATACTATTTTTTTTTTTTTGAGAATAATCCGAAG...
XM_057932073.1
CCGGAACTAAGCTAATTCAATCAGGAATACTATTTTTTTTTTTTTGAGAATAATCCGAAGCAAGTAAAGCTGCGCTGCTATCAGTCTCCAATCCATTCCAACTGTATATGTCGTATCTCGCTGCACAGTTGCAAGAAAGAACAACCTTCTTCCATTATTATCACTAGATCAGAGCTATAAGAGAAGAGAAAGAGAGTGTGAGGGAGCTGTCAAGGCCTCCTATTTACAGCAAAGAGAGATTTTCCAGCAATTTCGAGTTT...

CDS

3 records

下载 CDS FASTA
LOC131005230
ATGTATAGACAATCACCCAGCAGGAATCAAAGATCCAAAGGGATCAAGGTAAAAAATGTCCTGCAAGTTTGTTTGCTGCTTGCTGTTTGCTTTTGGTTGCTATACCAAGTAAAACATTCCCATGACAAGAAGACGGAATTTGATGAAACTGATGCCAAAAGCTCACTTCAAAAAACAAATAGTGACGAAATTATAAGACTCGGAAGGAAAGATATCCGTCCCCGAGTGGACCTAACGGATAAGAATGAGGGTCATGATGA...
LOC131005230
ATGTATAGACAATCACCCAGCAGGAATCAAAGATCCAAAGGGATCAAGGTAAAAAATGTCCTGCAAGTTTGTTTGCTGCTTGCTGTTTGCTTTTGGTTGCTATACCAAGTAAAACATTCCCATGACAAGAAGACGGAATTTGATGAAACTGATGCCAAAAGCTCACTTCAAAAAACAAATAGTGACGAAATTATAAGACTCGGAAGGAAAGATATCCGTCCCCGAGTGGACCTAACGGATAAGAATGAGGGTCATGATGA...

Protein

3 records

下载 Protein FASTA
XP_057788054.1
MYRQSPSRNQRSKGIKVKNVLQVCLLLAVCFWLLYQVKHSHDKKTEFDETDAKSSLQKTNSDEIIRLGRKDIRPRVDLTDKNEGHDEISEEEETTEEVEEDKHGEDDPEDKKVEERDDDEAAGRDDEREEHEQEKFDAEVDREQGLIDGGEREDGEDNEMQETDSEGHFQTEKHSTVDDTDHDAKDRIAHEAREEHYKADDASSAVTHDTRVVTENENEHMENSNEHPGNILEEEMKENNSEETYESETRKDLEVDGREA...
XP_057788055.1
MYRQSPSRNQRSKGIKVKNVLQVCLLLAVCFWLLYQVKHSHDKKTEFDETDAKSSLQKTNSDEIIRLGRKDIRPRVDLTDKNEGHDEISEEEETTEEVEEDKHGEDDPEDKKVEERDDDEAAGRDDEREEHEQEKFDAEVDREQGLIDGGEREDGEDNEMQETDSEGHFQTEKHSTVDDTDHDAKDRIAHEAREEHYKADDASSAVTHDTRVVTENENEHMENSNEHPGNILEEEMKENNSEETYESETRKDLEVDGREA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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