Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004900`

染色体: Chr01 坐标: 67072078-67072761 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004900`
名称	SmilChr01G004900
描述	probable calcium-binding protein CML36
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	67072078 - 67072761 / `+`

ID 对照

NCBI Gene ID	`LOC131005239`
GeneID	`131005239`
locus_tag	`-`
NCBI Name	`LOC131005239`
原始查询	`LOC131005239`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable calcium-binding protein CML36
产物	probable calcium-binding protein CML36
Arabidopsis	`AT3G10190` (AT3G10190) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:820181] identity=57.2; qcov=0.936; evalue=2.09e-47; confidence=medium
Rice	`Os05g0223000` (OsCML18) - identity=42; qcov=0.986; evalue=1.79e-27; confidence=medium
GO	GO:0005509 (calcium ion binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:131005239

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057788092.1`
2	Cytoplasm	细胞质	0.80000	`XP_057788092.1`
3	Nucleus	细胞核	0.00000	`XP_057788092.1`
4	Chromosome	染色体	0.00000	`XP_057788092.1`
5	Centromere	着丝粒	0.00000	`XP_057788092.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:67072239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr1:67072264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr1:67072265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:67072268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B39
`Chr1:67072285`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B73,C75,C82,D6
`Chr1:67072291`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B17,B59,C18,D9
`Chr1:67072323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr1:67072327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B15,B5,B62,C56
`Chr1:67072410`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:67072424`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A6,B112,D10
`Chr1:67072426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C10,C59,C81
`Chr1:67072460`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,C21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788092.1

140 aa

140

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

PF00036 EF-hand_1 16-43 aa PF13405 EF-hand_6 16-45 aa PF13499 EF-hand_7 16-76 aa PF13202 EF-hand_5 17-40 aa PF13833 EF-hand_8 21-41 aa PF13833 EF-hand_8 29-75 aa PF00036 EF-hand_1 53-77 aa PF13202 EF-hand_5 54-75 aa PF13833 EF-hand_8 87-114 aa PF00036 EF-hand_1 89-116 aa PF13405 EF-hand_6 89-118 aa PF13202 EF-hand_5 90-110 aa PF13833 EF-hand_8 102-140 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788092.1`	Pfam	`PF00036`	EF-hand_1	Domain	16	43	1.6e-27	93.6	EF hand domain
`XP_057788092.1`	Pfam	`PF13405`	EF-hand_6	Domain	16	45	3.9e-23	79.6	EF-hand domain
`XP_057788092.1`	Pfam	`PF13499`	EF-hand_7	Domain	16	76	9.4e-28	97.1	EF-hand domain pair
`XP_057788092.1`	Pfam	`PF13202`	EF-hand_5	Domain	17	40	2e-20	72.0	EF hand
`XP_057788092.1`	Pfam	`PF13833`	EF-hand_8	Domain	21	41	1.1e-18	67.5	EF-hand domain pair
`XP_057788092.1`	Pfam	`PF13833`	EF-hand_8	Domain	29	75	1.1e-18	67.5	EF-hand domain pair
`XP_057788092.1`	Pfam	`PF00036`	EF-hand_1	Domain	53	77	1.6e-27	93.6	EF hand domain
`XP_057788092.1`	Pfam	`PF13202`	EF-hand_5	Domain	54	75	2e-20	72.0	EF hand
`XP_057788092.1`	Pfam	`PF13833`	EF-hand_8	Domain	87	114	1.1e-18	67.5	EF-hand domain pair
`XP_057788092.1`	Pfam	`PF00036`	EF-hand_1	Domain	89	116	1.6e-27	93.6	EF hand domain
`XP_057788092.1`	Pfam	`PF13405`	EF-hand_6	Domain	89	118	3.9e-23	79.6	EF-hand domain
`XP_057788092.1`	Pfam	`PF13202`	EF-hand_5	Domain	90	110	2e-20	72.0	EF hand
`XP_057788092.1`	Pfam	`PF13833`	EF-hand_8	Domain	102	140	1.1e-18	67.5	EF-hand domain pair

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932109.1
CACCAATTCAATTAAGGGCTGATTTGCGAATTCTCCTTCAAAGCCACGCACGAGTCCGCCTCTGCCCAAACCCGCCGCTGCCTTCTGTCGATTTCCAGCCCTCTTCCACTCTCTTAAAACCTCGCCGACCAGCGTCCTCCCCTCGACCTCCGCCGGCATGGCGACGGAGGAGTGGACAGAGATATCCGCCGCCGTCTACTTCGAGCTGAAGCAGGCGTTCGAGATGATCGACCGCGATGGCGACGGGAAGATCACCAAGG...

CDS

1 records

下载 CDS FASTA

LOC131005239
ATGGCGACGGAGGAGTGGACAGAGATATCCGCCGCCGTCTACTTCGAGCTGAAGCAGGCGTTCGAGATGATCGACCGCGATGGCGACGGGAAGATCACCAAGGAGGAGCTCGAGTCGCTCCTGAGCCGGCTCGGCGCCGAACCTCCGAGCAAGGAGGAGCTGCGGCAGATGCTCAGCGAAGTCGACCGCGACGGAGACGGCTGCATCACGCTGGAGGAGTTCCACGCGATCGGATCGGCTTTCGCGCCGTCGACCGACAG...

Protein

1 records

下载 Protein FASTA

XP_057788092.1
MATEEWTEISAAVYFELKQAFEMIDRDGDGKITKEELESLLSRLGAEPPSKEELRQMLSEVDRDGDGCITLEEFHAIGSAFAPSTDSSELRHTFDFFDPDRDGRITAEELFSVFKTIGDARCTLEDCRRMIRGVDRNGDG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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