当前解析结果
SmilChr01G004963| 统一新 Gene ID | SmilChr01G004963 |
|---|---|
| 名称 | SmilChr01G004963 |
| 描述 | pentatricopeptide repeat-containing protein At3g12770-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 67706278 - 67708806 / - |
| NCBI Gene ID | LOC131005301 |
|---|---|
| GeneID | 131005301 |
| locus_tag | - |
| NCBI Name | LOC131005301 |
| 原始查询 | LOC131005301 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At3g12770-like |
| 产物 | pentatricopeptide repeat-containing protein At3g12770-like |
| Arabidopsis | AT3G12770 (MEF22)mitochondrial editing factor 22 [Source:NCBI gene (formerly Entrezgene);Acc:820459] identity=36; qcov=0.966; evalue=3.02e-117; confidence=medium |
| Rice | Os05g0307200- identity=36.9; qcov=0.876; evalue=8.01e-102; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005301 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057788183.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057788183.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057788183.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788183.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788183.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:67706569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B52,B8,C37,D4 |
Chr1:67706671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr1:67706689 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B53,B82,B99,C52,C86 |
Chr1:67706835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B52,B8,C37,D4 |
Chr1:67707058 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr1:67707090 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr1:67707091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B84,D10 |
Chr1:67707121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B119,B2,B52,B91 |
Chr1:67707178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B59,B63,D5 |
Chr1:67707902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:67708062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:67708141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788183.1PF13812
PPR_3 88-135 aa
PF13041
PPR_2 88-136 aa
PF01535
PPR 196-224 aa
PF13041
PPR_2 302-350 aa
PF01535
PPR 305-332 aa
PF01535
PPR 382-408 aa
PF01535
PPR 410-438 aa
PF01535
PPR 450-471 aa
PF20431
E_motif 520-582 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788183.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 88 | 135 | 4.4e-22 | 78.7 | Pentatricopeptide repeat domain |
XP_057788183.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 88 | 136 | 1.1e-43 | 147.8 | PPR repeat family |
XP_057788183.1 |
Pfam | PF01535 |
PPR | Repeat | 196 | 224 | 2.9e-40 | 134.4 | PPR repeat |
XP_057788183.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 302 | 350 | 1.1e-43 | 147.8 | PPR repeat family |
XP_057788183.1 |
Pfam | PF01535 |
PPR | Repeat | 305 | 332 | 2.9e-40 | 134.4 | PPR repeat |
XP_057788183.1 |
Pfam | PF01535 |
PPR | Repeat | 382 | 408 | 2.9e-40 | 134.4 | PPR repeat |
XP_057788183.1 |
Pfam | PF01535 |
PPR | Repeat | 410 | 438 | 2.9e-40 | 134.4 | PPR repeat |
XP_057788183.1 |
Pfam | PF01535 |
PPR | Repeat | 450 | 471 | 2.9e-40 | 134.4 | PPR repeat |
XP_057788183.1 |
Pfam | PF20431 |
E_motif | Repeat | 520 | 582 | 6.6e-16 | 59.0 | E motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。