当前解析结果
SmilChr01G004964| 统一新 Gene ID | SmilChr01G004964 |
|---|---|
| 名称 | SmilChr01G004964 |
| 描述 | uncharacterized SmilChr01G004964 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 67709037 - 67714474 / - |
| NCBI Gene ID | LOC131005302 |
|---|---|
| GeneID | 131005302 |
| locus_tag | - |
| NCBI Name | LOC131005302 |
| 原始查询 | LOC131005302 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MAR-binding filament-like protein [Source:NCBI gene (formerly Entrezgene);Acc:815980]; symbol=AT2G14910; hit=AT2G14910; species=arabidopsis; confidence=high |
| 产物 | MAR-binding filament-like protein [Source:NCBI gene (formerly Entrezgene);Acc:815980]; symbol=AT2G14910; hit=AT2G14910; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G14910 (AT2G14910)MAR-binding filament-like protein [Source:NCBI gene (formerly Entrezgene);Acc:815980] identity=62.2; qcov=0.852; evalue=3.32e-131; confidence=high |
| Rice | Os12g0581700- identity=53.9; qcov=0.823; evalue=1.47e-105; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF05542 (DUF760) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005302 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057788184.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.40000 | XP_057788184.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057788184.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057788184.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788184.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:67709274 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C52 |
Chr1:67709274 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C52 |
Chr1:67709676 |
AG |
A |
1bp_deletion | frameshift_variant | 16 | A18,B105,B134,B35,B41,B44,B56,B85,B96,C10,C30,C46,C53,C55,C86,D1 |
Chr1:67712385 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B27 |
Chr1:67712385 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B27 |
Chr1:67713431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B66,C8 |
Chr1:67713884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B84,D10 |
Chr1:67714047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B84,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788184.1PF05542
DUF760 74-155 aa
PF05542
DUF760 256-372 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788184.1 |
Pfam | PF05542 |
DUF760 | Family | 74 | 155 | 5.2e-49 | 165.3 | Protein of unknown function (DUF760) |
XP_057788184.1 |
Pfam | PF05542 |
DUF760 | Family | 256 | 372 | 5.2e-49 | 165.3 | Protein of unknown function (DUF760) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。