当前解析结果
SmilChr01G004981| 统一新 Gene ID | SmilChr01G004981 |
|---|---|
| 名称 | SmilChr01G004981 |
| 描述 | gallate 1-beta-glucosyltransferase 84A24-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 67855820 - 67858493 / - |
| NCBI Gene ID | LOC131005316 |
|---|---|
| GeneID | 131005316 |
| locus_tag | - |
| NCBI Name | LOC131005316 |
| 原始查询 | LOC131005316 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | gallate 1-beta-glucosyltransferase 84A24-like |
| 产物 | gallate 1-beta-glucosyltransferase 84A24-like |
| Arabidopsis | AT4G15480 (UGT84A1)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827220] identity=54.6; qcov=0.99; evalue=0; confidence=high |
| Rice | Os02g0188000 (OsUGT84C1)- identity=47.2; qcov=0.847; evalue=4.54e-121; confidence=high |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005316 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057788201.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057788201.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057788201.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788201.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788201.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:67856274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B13 |
Chr1:67856397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr1:67856406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B25,B8 |
Chr1:67856562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr1:67856619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr1:67856658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr1:67856691 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B13 |
Chr1:67856754 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B26 |
Chr1:67856754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr1:67856790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B25,B73 |
Chr1:67857697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:67857905 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B36,B94,C48,C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788201.1PF26168
Glyco_transf_N 7-46 aa
PF00201
UDPGT 286-406 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788201.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 7 | 46 | 1e-06 | 29.6 | Glycosyltransferase, N-terminal domain |
XP_057788201.1 |
Pfam | PF00201 |
UDPGT | Family | 286 | 406 | 1.5e-24 | 87.5 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。