Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005055`

染色体: Chr01 坐标: 68480592-68486417 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005055`
名称	SmilChr01G005055
描述	SWI/SNF complex subunit SWI3D
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68480592 - 68486417 / `+`

ID 对照

NCBI Gene ID	`LOC131005343`
GeneID	`131005343`
locus_tag	`-`
NCBI Name	`LOC131005343`
原始查询	`LOC131005343`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SWI/SNF complex subunit SWI3D
产物	SWI/SNF complex subunit SWI3D
Arabidopsis	`AT4G34430` (CHB3) DNA-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:829594] identity=44; qcov=1.06; evalue=0; confidence=medium
Rice	`Os04g0110300` (OsCHB704) - identity=37.4; qcov=0.867; evalue=1.56e-131; confidence=medium
GO	GO:0005515 (protein binding); GO:0008270 (zinc ion binding)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00249 (Myb_DNA-binding); PF00569 (ZZ); PF04433 (SWIRM); PF13921 (Myb_DNA-bind_6); PF16495 (SWIRM-assoc_1)
InterPro	-
eggNOG	-
NR	GeneID:131005343

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788246.1`
2	Chromosome	染色体	0.00000	`XP_057788246.1`
3	Centromere	着丝粒	0.00000	`XP_057788246.1`
4	Chromatin	染色质	0.00000	`XP_057788246.1`
5	Telomere	端粒	0.00000	`XP_057788246.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68480905`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C38
`Chr1:68480945`	`C`	`T`	EMS_canonical_SNV	stop_gained	154	A15,A2,A20,A21,A22,A23,A24,A5,A6,A7,A8,B100,B101,B103,B105,B107,B108,B109,B112,B113,B114,B117,B12,B121,B122,B123,B124,B125,B127,B13,B130,B131,B133,B135,B136,B137,B14,B140,B15,B16,B18,B2,B22,B23,B24,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B46,B47,B5,B50,B55,B56,B58,B59,B60,B62,B64,B65,B66,B67,B68,B7,B72,B73,B75,B79,B80,B81,B82,B83,B86,B88,B9,B90,B91,B92,B93,B96,B97,C11,C12,C13,C16,C18,C19,C20,C22,C23,C25,C27,C28,C29,C3,C33,C34,C35,C38,C40,C41,C42,C43,C46,C49,C52,C54,C55,C57,C6,C60,C63,C64,C65,C66,C67,C69,C7,C70,C71,C73,C74,C76,C78,C81,C82,C87,C9,D1,D10,D11,D2,D5,D7,D8,D9
`Chr1:68481062`	`C`	`T`	EMS_canonical_SNV	stop_gained	16	B105,B117,B122,B123,B14,B18,B2,B31,B40,B44,C11,C49,C67,C69,D2,D7
`Chr1:68481208`	`G`	`GA`	1bp_insertion	frameshift_variant	2	D10,D11
`Chr1:68481208`	`G`	`GA`	1bp_insertion	CDS_variant	2	D10,D11
`Chr1:68481223`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr1:68481245`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,C46,D6
`Chr1:68481253`	`T`	`TGA`	2bp_insertion	frameshift_variant	4	B30,B64,B81,C6
`Chr1:68481253`	`T`	`TGA`	2bp_insertion	CDS_variant	4	B30,B64,B81,C6
`Chr1:68481317`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,C11,C69
`Chr1:68482427`	`C`	`CT`	1bp_insertion	stop_gained,frameshift_variant	24	A22,A6,B111,B128,B24,B26,B31,B65,B86,B87,B89,B99,C18,C20,C23,C31,C4,C44,C55,C57,C73,C74,C84,C86
`Chr1:68484168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B140,C2,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788246.1

948 aa

474

948

SWIRM

Myb_DNA-binding

Myb_DNA-bind_6

SWIRM-assoc_1

PF04433 SWIRM 153-231 aa PF00569 ZZ 309-345 aa PF00249 Myb_DNA-binding 367-409 aa PF13921 Myb_DNA-bind_6 369-409 aa PF16495 SWIRM-assoc_1 795-870 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788246.1`	Pfam	`PF04433`	SWIRM	Domain	153	231	1.6e-19	70.6	SWIRM domain
`XP_057788246.1`	Pfam	`PF00569`	ZZ	Domain	309	345	1.8e-08	34.8	Zinc finger, ZZ type
`XP_057788246.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	367	409	5.6e-12	46.3	Myb-like DNA-binding domain
`XP_057788246.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	369	409	1.2e-06	29.3	Myb-like DNA-binding domain
`XP_057788246.1`	Pfam	`PF16495`	SWIRM-assoc_1	Family	795	870	1e-21	77.4	SWIRM-associated region 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009095249.1
TAGTCAACGGCGACTTTACCAACTTCACATTTAGCAGAAGCGCTATCACTTCTCAGCGATTTTATTTTAAATATAGCGAGCCATCGACACTAATATTCAGAATCAGCAATCACAACCATTGATATCCCAACGCAGATGAATCAACGGCGCAAAAAACGTTTACACGTCGAACACGAAAATTACCGTAGGCGGGTGTCGCAGAGGATAAATCTTATATAGATACATACAGCAGGGATGTACGTATCTTACAGAGTCGACTG...

XR_009095248.1
AGCGCTATCACTTCTCAGCGATTTTATTTTAAATATAGCGAGCCATCGACACTAATATTCAGAATCAGCAATCACAACCATTGATATCCCAACGCAGATGAATCAACGGCGCAAAAAACGTTTACACGTCGAACACGAAAATTACCGTAGGCGGGTGTCGCAGAGGATAAATCTTATATAGATACATACAGCAGGGATGTACGTATCTTACAGAGTCGACTGAAGCGGAGCTCATAAACAATGGAGGAAAAGCGAAGGGA...

CDS

1 records

下载 CDS FASTA

LOC131005343
ATGGAGGAAAAGCGAAGGGACTCCGCCGGTATTTCGCCTCCGACGGCGTCGGCGATGGAGGCTTCACCGTCGGAGCAGCCGATTTCTCGGCGGAGAGGCGGTTTGAAGAGGAAATCTGCCTCCATCAACAACAGCGGAGGCAGCTCGGCTTCTCAAACGACGTCTTCGAAGAGACAGGCGAGGGAGAAGCCTCAGGCGGTTCCTTTCCCTCCGATCCACATGAACGGGCCCTGCACTAGGGCACGCGTGCAGCCGTACAA...

Protein

1 records

下载 Protein FASTA

XP_057788246.1
MEEKRRDSAGISPPTASAMEASPSEQPISRRRGGLKRKSASINNSGGSSASQTTSSKRQAREKPQAVPFPPIHMNGPCTRARVQPYNSSSLSEVALLKSEVEAREAAAARAEEVSRLTENWEAMEAKIEAEYETIRSRDASAHVVPIHAGWFSWTKTHPLEERMLPSFFNGKSESRTPEIYMEIRNWIMKKFHLDPNTKVELKHLSELTVGEPDARQEVMEFLDYWGLINYHPFPNQEPAAMNVDVDANKDESGNIESLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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