Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005128`

染色体: Chr01 坐标: 69072506-69077970 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005128`
名称	SmilChr01G005128
描述	protein CHROMATIN REMODELING 35-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	69072506 - 69077970 / `+`

ID 对照

NCBI Gene ID	`LOC131005344`
GeneID	`131005344`
locus_tag	`-`
NCBI Name	`LOC131005344`
原始查询	`LOC131005344`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein CHROMATIN REMODELING 35-like
产物	protein CHROMATIN REMODELING 35-like
Arabidopsis	`AT2G16390` (DRD1) SNF2 domain-containing protein / helicase domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816136] identity=53.2; qcov=0.953; evalue=0; confidence=high
Rice	`Os07g0434500` - identity=56.6; qcov=0.729; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0080188 (gene silencing by siRNA-directed DNA methylation); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:131005344

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788247.1`
2	Chromosome	染色体	0.00000	`XP_057788247.1`
3	Centromere	着丝粒	0.00000	`XP_057788247.1`
4	Chromatin	染色质	0.00000	`XP_057788247.1`
5	Telomere	端粒	0.00000	`XP_057788247.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:69073682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr1:69075917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B38,B39,C13,C76,D3
`Chr1:69075932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr1:69075957`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,D4
`Chr1:69076380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B78,C10
`Chr1:69076573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:69076779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,B16
`Chr1:69076986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,B140
`Chr1:69077376`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788247.1

934 aa

467

934

ResIII

SNF2-rel_dom

Helicase_C

PF04851 ResIII 392-545 aa PF00176 SNF2-rel_dom 397-680 aa PF00271 Helicase_C 742-857 aa

XP_057788248.1

920 aa

460

920

ResIII

SNF2-rel_dom

Helicase_C

PF04851 ResIII 378-531 aa PF00176 SNF2-rel_dom 383-666 aa PF00271 Helicase_C 728-843 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788247.1`	Pfam	`PF04851`	ResIII	Family	392	545	2.1e-07	31.7	Type III restriction enzyme, res subunit
`XP_057788247.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	397	680	1.3e-23	84.3	SNF2-related domain
`XP_057788247.1`	Pfam	`PF00271`	Helicase_C	Domain	742	857	1.3e-13	51.8	Helicase conserved C-terminal domain
`XP_057788248.1`	Pfam	`PF04851`	ResIII	Family	378	531	2.1e-07	31.7	Type III restriction enzyme, res subunit
`XP_057788248.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	383	666	1.2e-23	84.3	SNF2-related domain
`XP_057788248.1`	Pfam	`PF00271`	Helicase_C	Domain	728	843	1.3e-13	51.8	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932265.1
TAGAGATCCACATTGCATAGTGCGCTGCACAAGAAAAAGACCCAAATAACTGAAGAAGGGAAGACTCTCCGTTCCCTTTTTTTTTTTTTTTTAATAATTATTTTTAACTTTTTGCTAACTATTCAGTTGCCCCTATCACTGTGAGCTCCGTACTCTCTTCTGCAAATCCTCTCATTTTTCACACACTAATTTGAAACATCCGGAGAAATGGATGCTGCTACCGATAGAAATTATCTCAGTCCCTTTTTGAAAAGATTTCC...

XM_057932264.1
ACTGAAGAAGGGAAGACTCTCCGTTCCCTTTTTTTTTTTTTTTTAATAATTATTTTTAACTTTTTGCTAACTATTCAGTTGCCCCTATCACTGTGAGCTCCGTACTCTCTTCTGCAAATCCTCTCATTTTTCACACACTAATTTGAAACATCCGGAGAAATGGATGCTGCTACCGATAGAAATTATCTCAGTCCCTTTTTGAAAAGATTTCCGGCAACTTCCTCAAGCGATTTGGGCTCAAAACGACGCAAACGGATAAA...

CDS

2 records

下载 CDS FASTA

LOC131005344
ATGGATGCTGCTACCGATAGAAATTATCTCAGTCCCTTTTTGAAAAGATTTCCGGCAACTTCCTCAAGCGATTTGGGCTCAAAACGACGCAAACGGATAAAAGCGGATGAAGGAAATGGTTATAGTTTTTCTAGCTATGGTAGCTTTCCTGCATCATGGCGCTTCGCATTTGACAAGAAAAGACAAGTTCTGAATGAGTCGGATCCTTTCACCACGAAGGATTTGTTGAACCAATTGGATTCTGGCAAATTTGGAAGTGT...

Protein

2 records

下载 Protein FASTA

XP_057788247.1
MDAATDRNYLSPFLKRFPATSSSDLGSKRRKRIKADEGNGYSFSSYGSFPASWRFAFDKKRQVLNESDPFTTKDLLNQLDSGKFGSVTKEIEDLIKRRRRVLDSFYALNPELSSTICLDVQDKVASKPMEVAPDVIDLDDDKDDELERLVPESQLSHHAAPVVIIDSDDDNDATTGHLEVDLKPPSLDLVIRDKPSGAGNLLMKDYVDRSSSGNLLMKDYVDRSSSGKSKNSQEAGVQMYITGEAEIGFTKDKGEYVGTD...

XP_057788248.1
MDAATDRNYLSPFLKRFPATSSSDLGSKRRKRIKADEGNGYSFSSYGSFPASWRFAFDKKRQVLNESDPFTTKDLLNQLDSGKFGSVTKEIEDLIKRRRRVLDSFYALNPELSSTICLDVQDKVASKPMEVAPDVIDLDDDKDDELERLVPESQLSHHAAPVVIIDSDDDNDATTGHLEVDLKPPSLDLVIRDKPSGAGNLLMKDYVDRSSSGKSKNSQEAGVQMYITGEAEIGFTKDKGEYVGTDDLEESDELSDTNSD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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