Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005104

染色体: Chr01 坐标: 68833697-68837380 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005104
名称SmilChr01G005104
描述uncharacterized SmilChr01G005104
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向68833697 - 68837380 / +

ID 对照

NCBI Gene IDLOC131005354
GeneID131005354
locus_tag-
NCBI NameLOC131005354
原始查询LOC131005354

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:816133]; symbol=AT2G16365; hit=AT2G16365; species=arabidopsis; confidence=weak
产物F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:816133]; symbol=AT2G16365; hit=AT2G16365; species=arabidopsis; confidence=weak
ArabidopsisAT2G16365 (AT2G16365)
F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:816133]
identity=31.6; qcov=0.276; evalue=1.87e-11; confidence=weak
RiceOs01g0687300
-
identity=28.6; qcov=0.328; evalue=5.3e-10; confidence=low
GOGO:0010099 (regulation of photomorphogenesis)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131005354

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057788260.1
2 Chromosome 染色体 0.00000 XP_057788260.1
3 Centromere 着丝粒 0.00000 XP_057788260.1
4 Chromatin 染色质 0.00000 XP_057788260.1
5 Telomere 端粒 0.00000 XP_057788260.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:68834645 G A EMS_canonical_SNV CDS_variant 3 B25,B5,C18
Chr1:68834664 G A EMS_canonical_SNV CDS_variant 2 A15,B28
Chr1:68834683 C T EMS_canonical_SNV CDS_variant 1 B101
Chr1:68834722 G A EMS_canonical_SNV CDS_variant 4 B133,B138,B69,B88
Chr1:68834817 G A EMS_canonical_SNV CDS_variant 2 B50,D7
Chr1:68834908 C T EMS_canonical_SNV CDS_variant 2 A15,B28
Chr1:68834923 G A EMS_canonical_SNV CDS_variant 5 A18,B125,B90,B92,C8
Chr1:68834941 C T EMS_canonical_SNV CDS_variant 3 A13,A3,B63
Chr1:68834942 G A EMS_canonical_SNV CDS_variant 1 B109
Chr1:68835031 G A EMS_canonical_SNV CDS_variant 1 B103
Chr1:68835042 G A EMS_canonical_SNV CDS_variant 1 B109
Chr1:68835087 C T EMS_canonical_SNV CDS_variant 1 B11

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057932277.1
GGCCATTGGCCCCCCCACGAGCTACACCTCGGCTTCGATATAATCCTTTTGACACATCTCTCTCTAATCTCTACGCACGCATCTCTCTCATCTCGCGAGGGCTATATCGTGTTCTCTTTTGTGCTTATCGATCAGTTTTGCTTAGTTGGATCGGTTTACTTCGTTTTGGTTTGCGCGTAGCTTCGGATTCAGCTGCACAAGGAAAACGGTGCAGTGTTCTTCGATTTCGAGAATTCTGTCCAGCACAAGAGGTTCAGATT...
XM_057932279.1
CCCCCCACGAGCTACACCTCGGCTTCGATATAATCCTTTTGACACATCTCTCTCTAATCTCTACGCACGCATCTCTCTCATCTCGCGAGGGCTATATCGTGTTCTCTTTTGTGCTTATCGATCAGTTTTGCTTAGTTGGATCGGTTTACTTCGTTTTGGTTTGCGCGTAGCTTCGGATTCAGCTGCACAAGGAAAACGGTGCAGTGTTCTTCGATTTCGAGAATTCTGTCCAGCACAAGAGATTGCTGAGTCTCAATCTT...

CDS

2 records

下载 CDS FASTA
LOC131005354
ATGTTGAATGGAGTTGTGCAACCTGTTAATGATGCTATTGAGAGGAGCAGACAAACTGTGCAGCCATACCAATCTCTCTGGCTGGCTCATTGGAAGCGAACAGACTGCGATGCAGCAGGAGATTCCACTAGTCCCAGTGCTTCTCGAAGCGAGGAACTTGACTATGTTGCTAGGAAAGATGGTTTAGCGAAGGGAGTGGAGACTTCTTCGAGGTCTGCCACTGTAGGGTTGACTAAGAAAAGAACGTTTGATATTGGTGA...
LOC131005354
ATGTTGAATGGAGTTGTGCAACCTGTTAATGATGCTATTGAGAGGAGCAGACAAACTGTGCAGCCATACCAATCTCTCTGGCTGGCTCATTGGAAGCGAACAGACTGCGATGCAGCAGGAGATTCCACTAGTCCCAGTGCTTCTCGAAGCGAGGAACTTGACTATGTTGCTAGGAAAGATGGTTTAGCGAAGGGAGTGGAGACTTCTTCGAGGTCTGCCACTGTAGGGTTGACTAAGAAAAGAACGTTTGATATTGGTGA...

Protein

2 records

下载 Protein FASTA
XP_057788260.1
MLNGVVQPVNDAIERSRQTVQPYQSLWLAHWKRTDCDAAGDSTSPSASRSEELDYVARKDGLAKGVETSSRSATVGLTKKRTFDIGDDFITIGGRSIGNDRVISSLDDQNTAVLSRLNPLKGSFVESHVSPEEYGIETYKFDKGKAVASVSSSQRSANMRILEHEQCCERRETDLLCERKVGSTSRSNNSSDECLRDSISCDHCLPMINRAWFLKMQKSSGIRLSPSQSNSSEENETTKSHIDSCSHLKLQKCDHGLGTM...
XP_057788262.1
MLNGVVQPVNDAIERSRQTVQPYQSLWLAHWKRTDCDAAGDSTSPSASRSEELDYVARKDGLAKGVETSSRSATVGLTKKRTFDIGDDFITIGGRSIGNDRVISSLDDQNTAVLSRLNPLKGSFVESHVSPEEYGIETYKFDKGKAVASVSSSQRSANMRILEHEQCCERRETDLLCERKVGSTSRSNNSSDECLRDSISCDHCLPMINRAWFLKMQKSSGIRLSPSQSNSSEENETTKSHIDSCSHLKLQKCDHGLGTM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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