Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005105`

染色体: Chr01 坐标: 68838134-68843070 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005105`
名称	SmilChr01G005105
描述	glucose-1-phosphate adenylyltransferase large subunit 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68838134 - 68843070 / `-`

ID 对照

NCBI Gene ID	`LOC131005374`
GeneID	`131005374`
locus_tag	`-`
NCBI Name	`LOC131005374`
原始查询	`LOC131005374`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glucose-1-phosphate adenylyltransferase large subunit 1-like
产物	glucose-1-phosphate adenylyltransferase large subunit 1-like
Arabidopsis	`AT4G39210` (APL3) Glucose-1-phosphate adenylyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830076] identity=70.6; qcov=1; evalue=0; confidence=high
Rice	`Os05g0580000` (OsAGPL3) - identity=69.4; qcov=0.88; evalue=0; confidence=high
GO	GO:0005978 (glycogen biosynthetic process); GO:0008878 (glucose-1-phosphate adenylyltransferase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00483 (NTP_transferase); PF25247 (LbH_GLGC)
InterPro	-
eggNOG	-
NR	GeneID:131005374

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057788297.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057788297.1`
3	Nucleus	细胞核	0.00000	`XP_057788297.1`
4	Chromosome	染色体	0.00000	`XP_057788297.1`
5	Centromere	着丝粒	0.00000	`XP_057788297.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68838324`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr1:68838511`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B131
`Chr1:68838662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:68839092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr1:68839223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B75,C47,C51,D4
`Chr1:68840233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr1:68841242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B4,C36
`Chr1:68841585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B122,C23,C8,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788297.1

527 aa

264

527

NTP_transferase

LbH_GLGC

PF00483 NTP_transferase 97-373 aa PF25247 LbH_GLGC 392-526 aa

XP_057788298.1

527 aa

264

527

NTP_transferase

LbH_GLGC

PF00483 NTP_transferase 97-373 aa PF25247 LbH_GLGC 392-526 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788297.1`	Pfam	`PF00483`	NTP_transferase	Family	97	373	4.2e-71	240.1	Nucleotidyl transferase
`XP_057788297.1`	Pfam	`PF25247`	LbH_GLGC	Repeat	392	526	4.4e-52	176.3	GLGC left-handed parallel beta-helix domain
`XP_057788298.1`	Pfam	`PF00483`	NTP_transferase	Family	97	373	4.2e-71	240.1	Nucleotidyl transferase
`XP_057788298.1`	Pfam	`PF25247`	LbH_GLGC	Repeat	392	526	4.4e-52	176.3	GLGC left-handed parallel beta-helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932315.1
GAAATTGAATTTAAGACCTCCCACAAAATAGAGTTTTTTAATGTCTCAACTTTGTCATTTGAACTAGGCCTCATCGAAAATATATATGAATTTTCGAAACCAAATTTTCACAAACTTATTATTTAAAACCCAGTGGAGTATTATATGAACCCATTTTCTTTCTTTTTTTAGGGATATCTCGCACAATTCTTTTAAATTTTCGGCGTTTATAAGCAAAATTCACAAAAATTGTTCGATCCAATCTCTGACTGTACATCATT...

XM_057932314.1
AATTCAGAGCGGCCTAGAAACGTGGACGATGGCCAACCCCCCCCCCCCCCCCCCCCAAAACCTTACACACACTACAATGGCTACTTATTATTGCTGTATTCACGCACTCGAGCGTGTTTATGTGTGTGAGATAAACAAGATCTCCACTTGGCCTACCTGATTTTTTTCCCATTCCAAAATCTCTCTCTATATATAGAAGTGAAGATCACATTTAACGAAAAAATAAGTTTGCAAGATTTCTCGTGAAAGCTCACAGGCCA...

CDS

2 records

下载 CDS FASTA

LOC131005374
ATGGATGCTTGCTGTGCTACACTGAAATCGGCATCCCATTTGGCGAATGTGAGCAAAAGTGTGTTGTGTGGTGAAGAGAATGGGTTTTTGGGAGAGAAGATTAGAGGGAGCCTAAACAATCGTGCCAGGATTTGTAAATTTGGGAAAAAATTCAATCTTGAGAAAAAGGGAAGGAAGATCAAACCTGGCGTTGCTTACTCTGTTCTCACCAGAGAAAACAGCAATCAAACTCTGGTGATACCGGCCCCACGATTCGAGAG...

Protein

2 records

下载 Protein FASTA

XP_057788297.1
MDACCATLKSASHLANVSKSVLCGEENGFLGEKIRGSLNNRARICKFGKKFNLEKKGRKIKPGVAYSVLTRENSNQTLVIPAPRFERQRANPKNVAAIILGGGAGAQLFPLTSRAATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHISRTYTGNGISFGDGYVEVLAATQTAGETGNRWFQGTADAVRQFIWVFEDAKAKDIDNILILSGDHLYRMDYMDFVQNHIDRNADITLSCAPVDDSRASAFG...

XP_057788298.1
MDACCATLKSASHLANVSKSVLCGEENGFLGEKIRGSLNNRARICKFGKKFNLEKKGRKIKPGVAYSVLTRENSNQTLVIPAPRFERQRANPKNVAAIILGGGAGAQLFPLTSRAATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHISRTYTGNGISFGDGYVEVLAATQTAGETGNRWFQGTADAVRQFIWVFEDAKAKDIDNILILSGDHLYRMDYMDFVQNHIDRNADITLSCAPVDDSRASAFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器