Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005075`

染色体: Chr01 坐标: 68627921-68657362 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005075`
名称	SmilChr01G005075
描述	coatomer subunit gamma-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68627921 - 68657362 / `-`

ID 对照

NCBI Gene ID	`LOC131005388`
GeneID	`131005388`
locus_tag	`-`
NCBI Name	`LOC131005388`
原始查询	`LOC131005388`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	coatomer subunit gamma-like
产物	coatomer subunit gamma-like
Arabidopsis	`AT4G34450` (AT4G34450) coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP [Source:NCBI gene (formerly Entrezgene);Acc:829596] identity=41.4; qcov=0.758; evalue=5.94e-40; confidence=medium
Rice	`Os07g0201100` - identity=39.9; qcov=0.755; evalue=1.42e-36; confidence=medium
GO	GO:0000139 (Golgi membrane); GO:0005783 (endoplasmic reticulum); GO:0005793 (endoplasmic reticulum-Golgi intermediate compartment); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006891 (intra-Golgi vesicle-mediated transport); GO:0009306 (protein secretion); GO:0030126 (COPI vesicle coat)
KEGG	-
Pfam	PF01602 (Adaptin_N)
InterPro	-
eggNOG	-
NR	GeneID:131005388

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057788328.1`
2	Nucleus	细胞核	1.00000	`XP_057788335.1`
3	Chromosome	染色体	0.00000	`XP_057788328.1`
4	Centromere	着丝粒	0.00000	`XP_057788328.1`
5	Chromatin	染色质	0.00000	`XP_057788328.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68628136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr1:68628312`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr1:68628362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B74,C38,C59
`Chr1:68628566`	`GCC`	`G`	2bp_deletion	frameshift_variant	1	B41
`Chr1:68628566`	`GCC`	`G`	2bp_deletion	CDS_variant	1	B41
`Chr1:68628611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B26,C40,C71
`Chr1:68628658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:68628949`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr1:68628957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B72,C66,C9
`Chr1:68629008`	`G`	`GTC`	2bp_insertion	frameshift_variant	139	A1,A13,A18,A20,A22,A24,A7,A8,B1,B10,B100,B102,B105,B107,B108,B109,B111,B112,B113,B115,B118,B120,B122,B124,B125,B13,B130,B131,B134,B137,B139,B140,B15,B16,B17,B18,B19,B21,B23,B26,B28,B29,B3,B30,B32,B34,B36,B37,B38,B39,B4,B41,B43,B45,B47,B48,B50,B51,B54,B55,B57,B59,B6,B60,B61,B64,B65,B66,B67,B68,B71,B74,B75,B77,B78,B79,B80,B81,B82,B84,B85,B86,B90,B92,B93,B94,B95,B97,B99,C1,C11,C15,C16,C17,C18,C19,C2,C20,C21,C24,C25,C26,C32,C33,C35,C36,C37,C44,C45,C46,C47,C48,C49,C5,C52,C53,C54,C55,C62,C63,C65,C67,C68,C70,C71,C72,C73,C75,C76,C80,C84,D1,D2,D3,D4,D5,D6,D7,D8
`Chr1:68629011`	`CT`	`C`	1bp_deletion	frameshift_variant	22	A10,A5,B108,B11,B114,B121,B127,B40,B44,B63,B69,B72,C28,C31,C38,C59,C60,C66,C85,C86,C9,D2
`Chr1:68629013`	`T`	`TTG`	2bp_insertion	frameshift_variant	120	A10,A11,A13,A14,A15,A16,A20,A21,A22,A23,A25,A5,A9,B1,B10,B101,B107,B108,B11,B110,B111,B112,B113,B114,B115,B118,B121,B123,B125,B126,B127,B128,B130,B135,B137,B138,B139,B16,B21,B22,B23,B28,B33,B34,B37,B38,B39,B4,B40,B44,B45,B46,B48,B51,B55,B56,B60,B61,B62,B63,B66,B67,B69,B72,B74,B76,B79,B84,B85,B87,B88,B89,B9,B90,B92,B93,B95,B98,C1,C10,C11,C14,C19,C2,C24,C27,C28,C29,C3,C31,C32,C34,C35,C38,C41,C42,C46,C50,C52,C53,C57,C59,C6,C60,C68,C72,C73,C74,C77,C80,C81,C85,C86,C87,C9,D1,D2,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788328.1

436 aa

218

436

Adaptin_N

PF01602 Adaptin_N 77-371 aa

XP_057788329.1

434 aa

217

434

Adaptin_N

PF01602 Adaptin_N 75-369 aa

XP_057788330.1

417 aa

208

417

Adaptin_N

PF01602 Adaptin_N 87-352 aa

XP_057788331.1

403 aa

202

403

Adaptin_N

PF01602 Adaptin_N 44-338 aa

XP_057788332.1

401 aa

200

401

Adaptin_N

PF01602 Adaptin_N 42-336 aa

XP_057788333.1

386 aa

193

386

Adaptin_N

PF01602 Adaptin_N 56-321 aa

XP_057788334.1

364 aa

182

364

Adaptin_N

PF01602 Adaptin_N 6-291 aa

XP_057788335.1

322 aa

161

322

Adaptin_N

PF01602 Adaptin_N 1-242 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788328.1`	Pfam	`PF01602`	Adaptin_N	Repeat	77	371	4.6e-30	105.4	Adaptin N terminal region
`XP_057788329.1`	Pfam	`PF01602`	Adaptin_N	Repeat	75	369	4.5e-30	105.4	Adaptin N terminal region
`XP_057788330.1`	Pfam	`PF01602`	Adaptin_N	Repeat	87	352	7.3e-24	84.9	Adaptin N terminal region
`XP_057788331.1`	Pfam	`PF01602`	Adaptin_N	Repeat	44	338	3.6e-30	105.7	Adaptin N terminal region
`XP_057788332.1`	Pfam	`PF01602`	Adaptin_N	Repeat	42	336	3.6e-30	105.8	Adaptin N terminal region
`XP_057788333.1`	Pfam	`PF01602`	Adaptin_N	Repeat	56	321	5.9e-24	85.2	Adaptin N terminal region
`XP_057788334.1`	Pfam	`PF01602`	Adaptin_N	Repeat	6	291	1.6e-26	93.7	Adaptin N terminal region
`XP_057788335.1`	Pfam	`PF01602`	Adaptin_N	Repeat	1	242	6.4e-17	62.0	Adaptin N terminal region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057932349.1
TATTTCACCAGCTTCAAGCCATTTAAAAATGGTGTTTTCGCAGCATACAAACCAAACAAATTTAAGACAATGCTGCGGCTGATTAAGAAGAGAGGCGACGATCGTCGTCGTAAAAAAGCAAATTGCTCTTGGTTTGTGGCGATTGAGAAGCGTGCTGTTTTAACGGAAGTTAGGAGTTTTGGTGATCCTCATTTGGATAAAGCAAGATGTTTGCCGATCATCAAAAAGCTTCTATATCTTCTCAATCAGGGTGAAACATT...

XM_057932348.1
TCAAGCCATTTAAAAATGGTGTTTTCGCAGCATACAAACCAAACAAATTTAAGACAATGCTGCGGCTGATTAAGAAGAGAGGCGACGATCGTCGTCGTAAAAAAGTTTCAGCAAATTGCTCTTGGTTTGTGGCGATTGAGAAGCGTGCTGTTTTAACGGAAGTTAGGAGTTTTGGTGATCCTCATTTGGATAAAGCAAGATGTTTGCCGATCATCAAAAAGCTTCTATATCTTCTCAATCAGGGTGAAACATTCACGAAG...

CDS

8 records

下载 CDS FASTA

LOC131005388
ATGCTGCGGCTGATTAAGAAGAGAGGCGACGATCGTCGTCGTAAAAAAGCAAATTGCTCTTGGTTTGTGGCGATTGAGAAGCGTGCTGTTTTAACGGAAGTTAGGAGTTTTGGTGATCCTCATTTGGATAAAGCAAGATGTTTGCCGATCATCAAAAAGCTTCTATATCTTCTCAATCAGGGTGAAACATTCACGAAGACTGAAGCTGCAGCAGTACTTTCTTCTGTTATAAAGTTATATCGATTTCAAGATATTCATTT...

LOC131005388
ATGCTGCGGCTGATTAAGAAGAGAGGCGACGATCGTCGTCGTAAAAAAGTTTCAGCAAATTGCTCTTGGTTTGTGGCGATTGAGAAGCGTGCTGTTTTAACGGAAGTTAGGAGTTTTGGTGATCCTCATTTGGATAAAGCAAGATGTTTGCCGATCATCAAAAAGCTTCTATATCTTCTCAATCAGGGTGAAACATTCACGAAGACTGAAGCTGCAGCAGTACTTTCTTCTGTTATAAAGTTATATCGATTTCAAGATAT...

Protein

8 records

下载 Protein FASTA

XP_057788328.1
MQIKKKMIFENFTSFKPFKNGVFAAYKPNKFKTMLRLIKKRGDDRRRQKVSANCSWFVAIEKRAVLTEVRSFGDPHLDKARCLPIIKKLLYLLNQGETFTKTEAAAVLSSVIKLYRFQDIHLRRMFYLIAKELCPVADEVELVTSSILKDTNSRTVIYRANAIRLLCRITIGTSSTTTQIEKCLSDAFGDKNHIVQSAALVCAINLIKRYPMMRYRIMIINLEKVLRTPAFVEYHSFYLTFMLRIAKGNVLEGETLVSIY...

XP_057788329.1
MQIKKKMIFENFTSFKPFKNGVFAAYKPNKFKTMLRLIKKRGDDRRRQKANCSWFVAIEKRAVLTEVRSFGDPHLDKARCLPIIKKLLYLLNQGETFTKTEAAAVLSSVIKLYRFQDIHLRRMFYLIAKELCPVADEVELVTSSILKDTNSRTVIYRANAIRLLCRITIGTSSTTTQIEKCLSDAFGDKNHIVQSAALVCAINLIKRYPMMRYRIMIINLEKVLRTPAFVEYHSFYLTFMLRIAKGNVLEGETLVSIYTE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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