Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005027`

染色体: Chr01 坐标: 68227810-68231451 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005027`
名称	SmilChr01G005027
描述	probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68227810 - 68231451 / `+`

ID 对照

NCBI Gene ID	`LOC131005399`
GeneID	`131005399`
locus_tag	`-`
NCBI Name	`LOC131005399`
原始查询	`LOC131005399`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5
产物	probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5
Arabidopsis	`AT3G18850` (LPAT5) lysophosphatidyl acyltransferase 5 [Source:NCBI gene (formerly Entrezgene);Acc:821418] identity=62.7; qcov=0.959; evalue=1.14e-173; confidence=high
Rice	`Os01g0782500` - identity=63.2; qcov=0.959; evalue=3.25e-169; confidence=high
GO	GO:0012505 (endomembrane system); GO:0016746 (acyltransferase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01553 (Acyltransferase); PF16076 (Acyltransf_C)
InterPro	-
eggNOG	-
NR	GeneID:131005399

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057788348.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057788348.1`
3	Nucleus	细胞核	0.00000	`XP_057788348.1`
4	Chromosome	染色体	0.00000	`XP_057788348.1`
5	Centromere	着丝粒	0.00000	`XP_057788348.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68228713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B41,C37,C40
`Chr1:68229057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B12,C58
`Chr1:68229528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr1:68229543`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B4,C36,D6
`Chr1:68230908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:68231114`	`G`	`GC`	1bp_insertion	frameshift_variant	13	A1,A16,A8,B101,B132,B2,B97,C14,C15,C21,C26,C73,D2
`Chr1:68231242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788348.1

366 aa

183

366

Acyltransferase

Acyltransf_C

PF01553 Acyltransferase 85-225 aa PF16076 Acyltransf_C 252-321 aa

XP_057788350.1

366 aa

183

366

Acyltransferase

Acyltransf_C

PF01553 Acyltransferase 85-225 aa PF16076 Acyltransf_C 252-321 aa

XP_057788351.1

366 aa

183

366

Acyltransferase

Acyltransf_C

PF01553 Acyltransferase 85-225 aa PF16076 Acyltransf_C 252-321 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788348.1`	Pfam	`PF01553`	Acyltransferase	Family	85	225	6.7e-19	68.7	Acyltransferase
`XP_057788348.1`	Pfam	`PF16076`	Acyltransf_C	Family	252	321	1.6e-17	63.9	Acyltransferase C-terminus
`XP_057788350.1`	Pfam	`PF01553`	Acyltransferase	Family	85	225	6.7e-19	68.7	Acyltransferase
`XP_057788350.1`	Pfam	`PF16076`	Acyltransf_C	Family	252	321	1.6e-17	63.9	Acyltransferase C-terminus
`XP_057788351.1`	Pfam	`PF01553`	Acyltransferase	Family	85	225	6.7e-19	68.7	Acyltransferase
`XP_057788351.1`	Pfam	`PF16076`	Acyltransf_C	Family	252	321	1.6e-17	63.9	Acyltransferase C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057932365.1
TACTTTTAGGTAATCCAAGAAACAACGAAAAGATCTAGGGGAATATCAGTGTCCCCATCTAACAATTTTGAAAACGATAAAAGAGGTCGTTTGAATAATAAATTATTAGGCAAAGAAATGGAGATTCAAGCATTTACCACATTGGGACTTGACTTCTGCTGCCAAGTCTCACTACTCCACTGTTGAATTTTCCTTTGGTAAAACCCAAGAATCTCTGCCACATTCTACCAAAATACCGAATAAATTCTCCCCAGAGCTTC...

XM_057932368.1
TACTTTTAGGTAATCCAAGAAACAACGAAAAGATCTAGGGGAATATCAGTGTCCCCATCTAACAATTTTGAAAACGATAAAAGAGGTCGTTTGAATAATAAATTATTAGGCAAAGAAATGGAGATTCAAGCATTTACCACATTGGGACTTGACTTCTGCTGCCAAGTCTCACTACTCCACTGTTGAATTTTCCTTTGGTAAAACCCAAGAATCTCTGCCACATTCTACCAAAATACCGAATAAATTCTCCCCAGAGCTTC...

CDS

3 records

下载 CDS FASTA

LOC131005399
ATGGAATCTTCGTCTCGCAAATTGAAACAAAGGCACCGTGCATTGACCGTGTTAAGAGTATTAAGGGGCATTCTTTGCTTAATCATTCTAATCTTGACAGCATTTGTATTGTTAGTGTTTTTCGGCTTTTGGGCAGCGGTTCCCTTGAGATTTCTCAGTTTGCATCACAGCAGGAATGCGACTTCATTCTTCTTTGGGATATGGATAGCTTTGTGGCCATTCTGGTTCGAAAAATTGAACAAGACCAAGGTGGTGTTTTC...

Protein

3 records

下载 Protein FASTA

XP_057788348.1
MESSSRKLKQRHRALTVLRVLRGILCLIILILTAFVLLVFFGFWAAVPLRFLSLHHSRNATSFFFGIWIALWPFWFEKLNKTKVVFSGDVVPAKERVLLIANHRTEVDWMYLWDLALRKGREGAIRYILKSSLMKMPVFGWIFHVMEFIPVERKWEADESVMCKMLSSFKDPQDPLWLAVFPEGTDFTEQKCSRSQKYASENGLPILKNVLLPKTKGFYACLEKLKDSLDAVYDITIGYRHNCPSFMDNACGIDPSEVHV...

XP_057788350.1
MESSSRKLKQRHRALTVLRVLRGILCLIILILTAFVLLVFFGFWAAVPLRFLSLHHSRNATSFFFGIWIALWPFWFEKLNKTKVVFSGDVVPAKERVLLIANHRTEVDWMYLWDLALRKGREGAIRYILKSSLMKMPVFGWIFHVMEFIPVERKWEADESVMCKMLSSFKDPQDPLWLAVFPEGTDFTEQKCSRSQKYASENGLPILKNVLLPKTKGFYACLEKLKDSLDAVYDITIGYRHNCPSFMDNACGIDPSEVHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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