Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005097`

染色体: Chr01 坐标: 68800272-68802269 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005097`
名称	SmilChr01G005097
描述	phenylcoumaran benzylic ether reductase POP1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68800272 - 68802269 / `+`

ID 对照

NCBI Gene ID	`LOC131005410`
GeneID	`131005410`
locus_tag	`-`
NCBI Name	`LOC131005410`
原始查询	`LOC131005410`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phenylcoumaran benzylic ether reductase POP1-like
产物	phenylcoumaran benzylic ether reductase POP1-like
Arabidopsis	`AT4G39230` (AT4G39230) NmrA-like negative transcriptional regulator family protein [Source:NCBI gene (formerly Entrezgene);Acc:830078] identity=68.5; qcov=1.02; evalue=1.21e-158; confidence=high
Rice	`Os06g0472200` - identity=63.1; qcov=1.02; evalue=2.36e-140; confidence=high
GO	GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF01370 (Epimerase); PF05368 (NmrA); PF13460 (NAD_binding_10)
InterPro	-
eggNOG	-
NR	GeneID:131005410

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057788378.1`
2	Cytoplasm	细胞质	0.60000	`XP_057788378.1`
3	Nucleus	细胞核	0.00000	`XP_057788378.1`
4	Chromosome	染色体	0.00000	`XP_057788378.1`
5	Centromere	着丝粒	0.00000	`XP_057788378.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68800419`	`CG`	`C`	1bp_deletion	frameshift_variant	71	A16,A23,A24,A3,A4,A6,A8,B101,B102,B105,B107,B110,B113,B126,B128,B133,B136,B138,B15,B16,B17,B18,B21,B26,B45,B46,B52,B54,B59,B61,B62,B64,B69,B7,B70,B71,B80,B82,B83,B84,B85,B86,B88,B97,C10,C17,C19,C25,C28,C3,C35,C40,C45,C47,C48,C5,C52,C57,C59,C63,C65,C67,C7,C70,C71,C72,C73,C77,C79,C86,D8
`Chr1:68800699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr1:68801891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,B117
`Chr1:68801895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B48,B64,C80,D2
`Chr1:68801896`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:68802130`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,C80
`Chr1:68802134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B30,C61
`Chr1:68802143`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C31
`Chr1:68802143`	`CG`	`C`	1bp_deletion	CDS_variant	1	C31
`Chr1:68802173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C11,C45,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788378.1

308 aa

154

308

NmrA

Epimerase

NAD_binding_10

PF05368 NmrA 4-303 aa PF01370 Epimerase 7-88 aa PF13460 NAD_binding_10 11-204 aa

XP_057788379.1

303 aa

152

303

NmrA

Epimerase

NAD_binding_10

PF05368 NmrA 4-298 aa PF01370 Epimerase 7-83 aa PF13460 NAD_binding_10 11-199 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788378.1`	Pfam	`PF05368`	NmrA	Family	4	303	4.4e-89	299.7	NmrA-like family
`XP_057788378.1`	Pfam	`PF01370`	Epimerase	Family	7	88	3.1e-09	37.3	NAD dependent epimerase/dehydratase family
`XP_057788378.1`	Pfam	`PF13460`	NAD_binding_10	Domain	11	204	1e-12	49.0	NAD(P)H-binding
`XP_057788379.1`	Pfam	`PF05368`	NmrA	Family	4	298	5.6e-84	283.0	NmrA-like family
`XP_057788379.1`	Pfam	`PF01370`	Epimerase	Family	7	83	6.8e-08	32.9	NAD dependent epimerase/dehydratase family
`XP_057788379.1`	Pfam	`PF13460`	NAD_binding_10	Domain	11	199	5.6e-12	46.6	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932395.1
ACCCCACTGCCCCCCTGGCTCCGCCCCTGATCATAACCAAACAAAAAATTCTTCTCCAACTGTCGATCGCCGGTGAATCCTTCAAATGGCCGGAAAGAGTAAAATTCTGATCATCGGAGCAACTGGATATATCGGAAAATTCATCGTCGGAGCCGCCGCCGCCGCTGGCCACCCCACTTTCGTCTTAGTCAGAGAGTCCACTCTCTCTAACCCGGAAAAATCCAACCTAATCCAAAGCTTCAGAGATTTCGGGGTCAATT...

XM_057932396.1
ACCCCACTGCCCCCCTGGCTCCGCCCCTGATCATAACCAAACAAAAAATTCTTCTCCAACTGTCGATCGCCGGTGAATCCTTCAAATGGCCGGAAAGAGTAAAATTCTGATCATCGGAGCAACTGGATATATCGGAAAATTCATCGTCGGAGCCGCCGCCGCCGCTGGCCACCCCACTTTCGTCTTAGTCAGAGAGTCCACTCTCTCTAACCCGGAAAAATCCAACCTAATCCAAAGCTTCAGAGATTTCGGGGGAGATA...

CDS

2 records

下载 CDS FASTA

LOC131005410
ATGGCCGGAAAGAGTAAAATTCTGATCATCGGAGCAACTGGATATATCGGAAAATTCATCGTCGGAGCCGCCGCCGCCGCTGGCCACCCCACTTTCGTCTTAGTCAGAGAGTCCACTCTCTCTAACCCGGAAAAATCCAACCTAATCCAAAGCTTCAGAGATTTCGGGGTCAATTTCATACCTGGAGATATGTATGATCACGAGAGTTTGTTGCGAGCAATCAAACAAGTTGATGTGGTGATATCAGCCGTTGGATACGC...

LOC131005410
ATGGCCGGAAAGAGTAAAATTCTGATCATCGGAGCAACTGGATATATCGGAAAATTCATCGTCGGAGCCGCCGCCGCCGCTGGCCACCCCACTTTCGTCTTAGTCAGAGAGTCCACTCTCTCTAACCCGGAAAAATCCAACCTAATCCAAAGCTTCAGAGATTTCGGGGGAGATATGTATGATCACGAGAGTTTGTTGCGAGCAATCAAACAAGTTGATGTGGTGATATCAGCCGTTGGATACGCTCAGTTGAATGATCA...

Protein

2 records

下载 Protein FASTA

XP_057788378.1
MAGKSKILIIGATGYIGKFIVGAAAAAGHPTFVLVRESTLSNPEKSNLIQSFRDFGVNFIPGDMYDHESLLRAIKQVDVVISAVGYAQLNDQDRILAAIKETGNIKRFFPSEFGNDVDRVHSVEPVTSVFQHKAQFRRVVEAAGVPYTYVSCNFFAGVFIRSLAQLGATSPPRDKVVILGDGNTKAVYNKEEDVATYTIKVVDDPRTSNKTLYIRPPANTISMNDLTTLWENKIGKKLERIYVPEEQVLKDIEEASSPLN...

XP_057788379.1
MAGKSKILIIGATGYIGKFIVGAAAAAGHPTFVLVRESTLSNPEKSNLIQSFRDFGGDMYDHESLLRAIKQVDVVISAVGYAQLNDQDRILAAIKETGNIKRFFPSEFGNDVDRVHSVEPVTSVFQHKAQFRRVVEAAGVPYTYVSCNFFAGVFIRSLAQLGATSPPRDKVVILGDGNTKAVYNKEEDVATYTIKVVDDPRTSNKTLYIRPPANTISMNDLTTLWENKIGKKLERIYVPEEQVLKDIEEASSPLNVRLGI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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