Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005157`

染色体: Chr01 坐标: 69340517-69346912 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005157`
名称	SmilChr01G005157
描述	squalene synthase 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	69340517 - 69346912 / `+`

ID 对照

NCBI Gene ID	`LOC131005489`
GeneID	`131005489`
locus_tag	`-`
NCBI Name	`LOC131005489`
原始查询	`LOC131005489`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	squalene synthase 1-like
产物	squalene synthase 1-like
Arabidopsis	`AT4G34640` (SQS1) squalene synthase 1 [Source:NCBI gene (formerly Entrezgene);Acc:829616] identity=74.6; qcov=0.99; evalue=0; confidence=high
Rice	`Os03g0805100` - identity=70.4; qcov=0.939; evalue=0; confidence=high
GO	GO:0004310 (GO:0004310); GO:0005789 (endoplasmic reticulum membrane); GO:0008610 (lipid biosynthetic process); GO:0045338 (farnesyl diphosphate metabolic process); GO:0051996 (squalene synthase [NAD(P)H] activity)
KEGG	smil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00494 (SQS_PSY)
InterPro	-
eggNOG	-
NR	GeneID:131005489

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057788475.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057788475.1`
3	Nucleus	细胞核	0.00000	`XP_057788475.1`
4	Chromosome	染色体	0.00000	`XP_057788475.1`
5	Centromere	着丝粒	0.00000	`XP_057788475.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:69341710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr1:69341719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B4,C36,C82
`Chr1:69342585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr1:69343692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr1:69344057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B4,C36,C82
`Chr1:69344370`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A11
`Chr1:69344370`	`TG`	`T`	1bp_deletion	CDS_variant	1	A11
`Chr1:69344381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,C2,C48
`Chr1:69345434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C36,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788475.1

413 aa

206

413

SQS_PSY

PF00494 SQS_PSY 44-315 aa

XP_057788476.1

413 aa

206

413

SQS_PSY

PF00494 SQS_PSY 44-315 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788475.1`	Pfam	`PF00494`	SQS_PSY	Domain	44	315	1.6e-52	179.5	Squalene/phytoene synthase
`XP_057788476.1`	Pfam	`PF00494`	SQS_PSY	Domain	44	315	1.6e-52	179.5	Squalene/phytoene synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932492.1
TCACGTTCCGTCAAAATCCAACATCCCATTCGTTCCCACCCACCTCCGCCCGCCACCTCCACACACACTCACTCGTAAACGGTATTTTTCTCTCATCTATAAAATAAAGTATGTCCATAATATTTTTGGTCACAATTACAAACGCACACACATTCTCTCTCTATATCTCTCTCACACACGCGCACGAATTCCATCGTCCTCGCTTCACGCAGCTGATTGGAAGTATTTTCAGAACCACAGTTTGAGATGGGGAGTTTACG...

XM_057932493.1
CCTCCACACACACTCACTCGTAAACGGTATTTTTCTCTCATCTATAAAATAAAGTATGTCCATAATATTTTTGGTCACAATTACAAACGCACACACATTCTCTCTCTATATCTCTCTCACACACGCGCACGAATTCCATCGTCCTCGCTTCACGCAGCTGATTGGAAGTATTTTCAGAACCACAGTTTGAGATGGGGAGTTTACGTGCGATTTTGAGGCATCCGGATGATTTGTATCCATTGCTGAAGCTGAAATACGCG...

CDS

2 records

下载 CDS FASTA

LOC131005489
ATGGGGAGTTTACGTGCGATTTTGAGGCATCCGGATGATTTGTATCCATTGCTGAAGCTGAAATACGCGGCGAGAAATGCGGAGAAGCAGATCCCGCCGGAGCCACACTGGGGATTTTGTTACACCATGCTTCACAAGGTTTCTAGAAGTTTCGGTCTCGTTATTCAGCAGCTCGATACCGATCTTCGCGATGCTATATGCATTTTCTATTTGGTTCTTCGAGCACTTGACACTGTTGAGGATGACACTAGCATAGCAAC...

Protein

2 records

下载 Protein FASTA

XP_057788475.1
MGSLRAILRHPDDLYPLLKLKYAARNAEKQIPPEPHWGFCYTMLHKVSRSFGLVIQQLDTDLRDAICIFYLVLRALDTVEDDTSIATELKVPILMAFHRHIFDREWHFSCGTKEYRVLMDQFHHVSTAFLELAPGYQDAIEDITMRMGAGMAKFICKEVETTNDYDEYCHYVAGLVGLGLSKLFHASGKEDLATDAMSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEDLKSQENSVKAVQCLNDMV...

XP_057788476.1
MGSLRAILRHPDDLYPLLKLKYAARNAEKQIPPEPHWGFCYTMLHKVSRSFGLVIQQLDTDLRDAICIFYLVLRALDTVEDDTSIATELKVPILMAFHRHIFDREWHFSCGTKEYRVLMDQFHHVSTAFLELAPGYQDAIEDITMRMGAGMAKFICKEVETTNDYDEYCHYVAGLVGLGLSKLFHASGKEDLATDAMSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEDLKSQENSVKAVQCLNDMV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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