Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005158`

染色体: Chr01 坐标: 69347310-69352162 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005158`
名称	SmilChr01G005158
描述	SH3 domain-containing protein 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	69347310 - 69352162 / `-`

ID 对照

NCBI Gene ID	`LOC131005491`
GeneID	`131005491`
locus_tag	`-`
NCBI Name	`LOC131005491`
原始查询	`LOC131005491`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SH3 domain-containing protein 2-like
产物	SH3 domain-containing protein 2-like
Arabidopsis	`AT4G34660` (AT4G34660) SH3 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829618] identity=73.3; qcov=1.01; evalue=0; confidence=high
Rice	`Os10g0512700` - identity=72.4; qcov=1.02; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00018 (SH3_1); PF07653 (SH3_2); PF14604 (SH3_9)
InterPro	-
eggNOG	-
NR	GeneID:131005491

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	1.00000	`XP_057788477.1`
2	Cytosol	细胞质基质	1.00000	`XP_057788477.1`
3	Vesicle	囊泡	1.00000	`XP_057788477.1`
4	Cytoplasm	细胞质	0.80000	`XP_057788477.1`
5	Endocytic vesicle	Endocytic vesicle	0.80000	`XP_057788477.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:69347983`	`GAT`	`G`	2bp_deletion	frameshift_variant	1	B1
`Chr1:69347983`	`GAT`	`G`	2bp_deletion	CDS_variant	1	B1
`Chr1:69348265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr1:69348426`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B125,B90,B92
`Chr1:69348586`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B32,C37
`Chr1:69348686`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B53,B81,C4,C76
`Chr1:69349931`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr1:69350433`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr1:69350585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,C2,C48,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788477.1

376 aa

188

376

SH3_1

SH3_9

SH3_2

PF00018 SH3_1 314-357 aa PF14604 SH3_9 314-362 aa PF07653 SH3_2 325-362 aa

XP_057788478.1

371 aa

186

371

SH3_1

SH3_9

SH3_2

PF00018 SH3_1 309-352 aa PF14604 SH3_9 309-357 aa PF07653 SH3_2 320-357 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788477.1`	Pfam	`PF00018`	SH3_1	Domain	314	357	6.3e-10	39.2	SH3 domain
`XP_057788477.1`	Pfam	`PF14604`	SH3_9	Domain	314	362	3.6e-10	40.3	Variant SH3 domain
`XP_057788477.1`	Pfam	`PF07653`	SH3_2	Domain	325	362	2.2e-07	31.2	Variant SH3 domain
`XP_057788478.1`	Pfam	`PF00018`	SH3_1	Domain	309	352	6.2e-10	39.2	SH3 domain
`XP_057788478.1`	Pfam	`PF14604`	SH3_9	Domain	309	357	3.5e-10	40.3	Variant SH3 domain
`XP_057788478.1`	Pfam	`PF07653`	SH3_2	Domain	320	357	2.1e-07	31.2	Variant SH3 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932494.1
CGCAACATATATATATGTCTAAATTTGAGAATCTTATTCCAACAAAGAAAATTAGAAATAGATCTGATTTTTGCAATTCTTTTACTCCCACAAAAAAACAACCGTACATCTACAAACTGTTATCTGGAAAGATCAAACACATTCAAATAAACTTTGACGCCTTATAGATCTTCTCCTTTAAACCCCAATCCATCTACTGTATATTCCTTTATCCTGCAGAAAAAGTTACAACTGTTTCAGCTGTGTGTGTGTGAATTGTA...

XM_057932495.1
AATTTGAGAATCTTATTCCAACAAAGAAAATTAGAAATAGATCTGATTTTTGCAATTCTTTTACTCCCACAAAAAAACAACCGTACATCTACAAACTGTTATCTGGAAAGATCAAACACATTCAAATAAACTTTGACGCCTTATAGATCTTCTCCTTTAAACCCCAATCCATCTACTGTATATTCCTTTATCCTGCAGAAAAAGTTACAACTGTTTCAGCTGTGTGTGTGTGAATTGTAGCTACAATTTGGGAGGTGTTG...

CDS

2 records

下载 CDS FASTA

LOC131005491
ATGGAAGCCATCAGAAAGCAAGCGTCCAGACTCCGAGAACAGGTCGCCAGGCAACAGCAGTTTGGTGCCTATGGTGGTTCAGATAATGTCATGCCTGATGATGCAGAATTCCAGCAGCACCAAAAGCTTGAAAAGCTATACATATCTACTCGAGCTGCCAAGCATTTCCAGAGGGACATTGTTCGTGGTGTTGAAGGTTTTATAGTAACGGGGTCCAAACAAGTCGAGATAGGAACAAAATTGTCAGAAGATAGTAGAAA...

LOC131005491
ATGGAAGCCATCAGAAAGCAAGCGTCCAGACTCCGAGAACAGGTCGCCAGGCAACAGCAGGCTGTTTTGAAGCAGTTTGGTGCCTATGGTGGTTCAGATAATGTCATGCCTGATGATGCAGAATTCCAGCAGCACCAAAAGCTTGAAAAGCTATACATATCTACTCGAGCTGCCAAGCATTTCCAGAGGGACATTGTTCGTGGTGTTGAAGGTTTTATAGTAACGGGGTCCAAACAAGTCGAGATAGGAACAAAATTGTC...

Protein

2 records

下载 Protein FASTA

XP_057788477.1
MEAIRKQASRLREQVARQQQAVLKQFGAYGGSDNVMPDDAEFQQHQKLEKLYISTRAAKHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDSRKYGVENTCTSGSTLSKAASNFARSRAQMEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAVEVARRQAKLREGNAHPDMAFKLEAAESKLQDLKSNVATLGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQQVLQILDMLEGEMMSER...

XP_057788478.1
MEAIRKQASRLREQVARQQQFGAYGGSDNVMPDDAEFQQHQKLEKLYISTRAAKHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDSRKYGVENTCTSGSTLSKAASNFARSRAQMEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAVEVARRQAKLREGNAHPDMAFKLEAAESKLQDLKSNVATLGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQQVLQILDMLEGEMMSERQRIES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器